Efficient and accurate detection of topologically associating domains from contact maps

DOI10.4230/LIPICS.WABI.2017.22zbMATH Open1443.92134OpenAlexW2752582271MaRDI QIDQ5111829FDOQ5111829

Stefano Lonardi, Abbas Roayaei Ardakany

Publication date: 27 May 2020

Full work available at URL: https://dblp.uni-trier.de/db/conf/wabi/wabi2017.html#ArdakanyL17

Recommendations

• Network modelling of topological domains using Hi-C data
• Diffdomain enables identification of structurally reorganized topologically associating domains
• Topological data analysis of single-cell Hi-C contact maps
• Translocation Detection from Hi-C Data via Scan Statistics
• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data

zbMATH Keywords

chromatincontact maps3D genomeHi-CTADs

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Cited In (2)

• Translocation Detection from Hi-C Data via Scan Statistics
• EAST

Uses Software

• GitHub

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