Efficient and accurate detection of topologically associating domains from contact maps

DOI10.4230/LIPICS.WABI.2017.22MaRDI QIDQ5111829zbMATH OpenOpenAlexFDO

Authors Abbas Roayaei Ardakany, Stefano Lonardi

Publication date 27 May 2020

Full work available at URL https://dblp.uni-trier.de/db/conf/wabi/wabi2017.html#ArdakanyL17

zbMATH Keywords

chromatincontact maps3D genomeHi-CTADs

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Recommendations

• Network modelling of topological domains using Hi-C data
• Diffdomain enables identification of structurally reorganized topologically associating domains
• Topological data analysis of single-cell Hi-C contact maps
• Translocation Detection from Hi-C Data via Scan Statistics
• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data

Cited in

(8)

• Proposing a novel community detection approach to identify cointeracting genomic regions
• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
• EAST
• Network modelling of topological domains using Hi-C data
• Translocation Detection from Hi-C Data via Scan Statistics
• Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi
• Topological data analysis of single-cell Hi-C contact maps
• Diffdomain enables identification of structurally reorganized topologically associating domains

Describes a project that uses

Uses Software

• GitHub

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