Cited in
(56)- Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
- A finite mixture approach to joint clustering of individuals and multivariate discrete outcomes
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- RNA bioinformatics
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Bioconductor
- mixfdr
- edgeR
- EDGE
- DEGseq
- CNAmet
- RankProd
- MAANOVA
- DEseq
- EDAseq
- limma
- RUVseq
- lpc
- PoiClaClu
- QuasiSeq
- MDM
- HmmSeq
- ShrinkBayes
- svaseq
- Voom
- DiffSplice
- DoubleExpSeq
- EBSeq
- recount
- TopHat
- BADER
- EmpDiff
- BiGGEsTS
- compcodeR
- DEXUS
- IUTA
- rSeqDiff
- EXPANDER
- SpliceTrap
- GPSeq
- WemIQ
- CLIFF
- DESeq2
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- NBLDA
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data
- A random effect model for reconstruction of spatial chromatin structure
- Some approximation results for Bayesian posteriors that involve the Hurwitz-Lerch zeta distribution
- Statistical analysis of next generation sequencing data
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
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