Cited in
(43)- Statistical genomics. Methods and protocols
- \(p\)-value calibration for multiple testing problems in genomics
- Block-Diagonal Covariance Selection for High-Dimensional Gaussian Graphical Models
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- edgeR
- AnnotationDbi
- BaySeq
- CAPUSHE
- HTSeq
- AnnotationHub
- AnnotationForge
- BEDOPS
- Cutadapt
- NGS QC Toolkit
- DREME
- ExpTreeDB
- F-Seq
- GMAP
- GeneSigDB
- GEOmetadb
- GSVA
- Genoviz
- GeneHug-GEPIS
- GenomeGraphs
- GSNAP
- OrganismDbi
- Oncomine
- NGS-QC
- pyDNase
- Rtracklayer
- VarSifter
- VariantTools
- VariantAnnotation
- Sample size determination for training cancer classifiers from microarray and RNA-seq data
- BADER
- EmpDiff
- DEXUS
- CAMERA
- General sparse multi-class linear discriminant analysis
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Clustering transformed compositional data using \(K\)-means, with applications in gene expression and bicycle sharing system data
- Missing value imputation for gene expression data by tailored nearest neighbors
- coseq
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