p-value calibration for multiple testing problems in genomics

DOI10.1515/SAGMB-2013-0074zbMATH Open1302.92013OpenAlexW2313630631WikidataQ44115740 ScholiaQ44115740MaRDI QIDQ482816FDOQ482816

Authors: John P. Ferguson, Dean Palejev 

Publication date: 6 January 2015

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2013-0074

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zbMATH Keywords

conditional likelihoodcalibration\(p\)-valueconservative testFDR correction

Mathematics Subject Classification ID

General biostatistics (92B15) Biochemistry, molecular biology (92C40)

Cites Work

• Title not available (Why is that?)
• Testing Statistical Hypotheses
• Calibration of \(\rho \) values for testing precise null hypotheses
• All of Nonparametric Statistics
• Microarrays, empirical Bayes and the two-groups model
• Detecting mutations in mixed sample sequencing data using empirical Bayes
• Genomic Control for Association Studies

Cited In (2)

• D\_CDF test of negative \(\log\) transformed \(p\)-values with application to genetic pathway analysis
• Accurate and flexible power calculations on the spot: applications to genomic research

Uses Software

• R
• DEseq
• recount
• Eigenstrat

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