QuasiSeq

swMATH11359CRANQuasiSeqMaRDI QIDQ23305

Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood

Steve Lund, Long Qu, R Development Core Team, Klirk Bhasavanich, Ian Marschner

Last update: 15 August 2022

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.0-1, 1.0-2, 1.0-3, 1.0-4, 1.0-5, 1.0-6, 1.0-7, 1.0-8, 1.0-10-1, 1.0-10-2, 1.0-11-0

Source code repository: https://github.com/cran/QuasiSeq

Cites work

• Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates

Described by source

• Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates

Related Items (6)

What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment ⋮ No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data ⋮ Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates ⋮ Estimation and testing of gene expression heterosis ⋮ Detecting rare and faint signals via thresholding maximum likelihood estimators ⋮ Modeling overdispersion heterogeneity in differential expression analysis using mixtures

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