QuasiSeq

swMATH11359CRANQuasiSeqMaRDI QIDQ23305FDOQ23305

Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood

Steve Lund, Long Qu, R Development Core Team, Klirk Bhasavanich, Ian Marschner

Last update: 15 August 2022

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.0-1, 1.0-2, 1.0-3, 1.0-4, 1.0-5, 1.0-6, 1.0-7, 1.0-8, 1.0-10-1, 1.0-10-2, 1.0-11-0

Official website: http://cran.r-project.org/web/packages/QuasiSeq/index.html

Source code repository: https://github.com/cran/QuasiSeq

Cites work

• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

Described by source

• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

Cited In (14)

• What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
• Detecting rare and faint signals via thresholding maximum likelihood estimators
• BaySeq
• DEseq
• RUVseq
• ShrinkBayes
• csaw
• diffHic
• compcodeR
• DEXUS
• Modeling overdispersion heterogeneity in differential expression analysis using mixtures
• Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
• Estimation and testing of gene expression heterosis
• No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data

This page was built for software: QuasiSeq