Cited in
(only showing first 100 items - show all)- Computational cell biology. Methods and protocols
- Statistical genomics. Methods and protocols
- SpliceTAPyR -- an efficient method for transcriptome alignment
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
- RNA bioinformatics
- STAR
- Bioconductor
- gcrma
- oligo
- edgeR
- AnnotationDbi
- DEGseq
- onechannelgui
- RankProd
- Soap
- casper
- BaySeq
- DEseq
- limma
- AUGUSTUS
- JIGSAW
- SCOOP
- SLAM
- BioNet
- Evigan
- Biostrings
- Voom
- VCFtools
- CompaRNA
- ShortRead
- BLAT
- HTSeq
- Galaxy
- FastQC
- DiffSplice
- DoubleExpSeq
- Assemble
- CentroidAlign
- CENTROIDFOLD
- ASPIC
- COFOLD
- AstexViewer
- ASPicDB
- DAFS
- ASTALAVISTA
- BioMart
- DARNED
- Exogean
- EBSeq
- ExpEdit
- FragGeneScan
- IPknot
- AnnotationHub
- AnnotationForge
- BSgenome
- CellMiner
- BEDTools
- BEDOPS
- Apollo
- Minimus
- Artemis
- PicXAA-R
- PETfold
- NGS-Trex
- Cutadapt
- PPfold
- NGS QC Toolkit
- CEGMA
- DREME
- ExpTreeDB
- PIntron
- RNAexinv
- RNAfbinv
- Rnaz
- R-Coffee
- PARalyzer
- F-Seq
- PatSearch
- R4RNA
- GenomicFeatures
- OligoWalk
- GMAP
- RNAG
- OptiRNAi
- RNAspa
- GeneSigDB
- RNASTAR
- GEOquery
- RILogo
- GEOmetadb
- ECgene
- RNA2D3D
- PolyA_DB
- REDItools
- RSeQC
- RAST
- IGV
- GSVA
- Genoviz
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