swMATH41938MaRDI QIDQ1353038FDOQ1353038
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Official website: https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Source code repository: https://github.com/mikelove/DESeq2
Cited In (only showing first 100 items - show all)
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Bioconductor
- gcrma
- mixfdr
- edgeR
- WGCNA
- SAM
- DEGseq
- BaySeq
- DEseq
- limma
- RUVseq
- maSigPro
- gvlma
- leapp
- PoiClaClu
- QuasiSeq
- BMSS
- Phyloseq
- MADAM
- miRSystem
- samr
- ShrinkBayes
- TopKLists
- svaseq
- Voom
- DOSE
- EBSeq
- DAVID
- RSEM
- NBC
- recount
- qvalue
- zCompositions
- UpSetR
- deconvolveR
- adaptiveGPCA
- Scotty
- PICNIC
- EmpDiff
- REBayes
- FABIA
- Minfi
- compcodeR
- DEXUS
- SC3
- structSSI
- MetamicrobiomeR
- MicrobiomeAnalyst
- smoothfdr
- IUTA
- ePCA
- rSeqDiff
- brunnermunzel
- CHIME
- clusterProfiler
- AdaPT
- adaptMT
- GSEA-P
- CAMERA
- MAST
- MultiCluster
- Pvalue Weighting
- gprege
- QUBIC
- CIDR
- UNDO
- topGO
- DivNet
- ZIFA
- TCGAbiolinks
- UPARSE
- USEARCH
- powsimR
- SNN-Cliq
- SimSeq
- GPSeq
- splatter
- CorBin
- ChAMP
- FastDMA
- PINCAGE
- WemIQ
- zinbwave
- ggtree
- CountClust
- GuidedSparseKmeans
- iClusterPlus
- BPSC
- smashr
- DeconRNASeq
- FSCseq
- NB.MClust
- treeio
- \texttt{TopKLists}: a comprehensive \texttt{R} package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
- Modeling microbial abundances and dysbiosis with beta-binomial regression
- DDL
- Symmetric directional false discovery rate control
- ptmixed
- muscData
This page was built for software: DESeq2
