Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq

DOI10.1016/j.jkss.2017.08.001zbMath1390.62324OpenAlexW2760017307MaRDI QIDQ684055

Tae Young Yang, Seongmun Jeong

Publication date: 9 February 2018

Published in: Journal of the Korean Statistical Society (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jkss.2017.08.001

zbMATH Keywords

length biasRNA-Seqcommon weightindividual weightseparate procedureweighted procedure

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Uses Software

• Bioconductor
• edgeR
• DEGseq
• BaySeq
• DEseq

Cites Work

• Unnamed Item
• High-dimensional variable selection
• Genome-wide significance levels and weighted hypothesis testing
• Simultaneous inference: when should hypothesis testing problems be combined?
• Simultaneous Testing of Grouped Hypotheses: Finding Needles in Multiple Haystacks
• False discovery control with p-value weighting
• A Direct Approach to False Discovery Rates
• Comment: ``Microarrays, empirical Bayes and the two-groups model

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