Estimation of sparse directed acyclic graphs for multivariate counts data

DOI10.1111/BIOM.12467MaRDI QIDQ2827189zbMATH OpenOpenAlexWikidataFDO

Authors Sung Won Han, Hua Zhong

Publication date 12 October 2016

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4975686

zbMATH Keywords

count dataBayesian networkdirected acyclic graphpenalized likelihood estimationLasso estimationunknown variable ordering

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Estimation in multivariate analysis (62H12)

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Cites work

• 10.1162/153244302760200696
• A Limited Memory Algorithm for Bound Constrained Optimization
• High-dimensional graphs and variable selection with the Lasso
• Learning Sparse Causal Gaussian Networks With Experimental Intervention: Regularization and Coordinate Descent
• Model selection and estimation in the Gaussian graphical model
• PC algorithm for nonparanormal graphical models
• Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
• Sparse inverse covariance estimation with the graphical lasso
• Sparse permutation invariant covariance estimation
• The multivariate Poisson-log normal distribution

Cited in

(9)

• Learning gene regulatory networks from next generation sequencing data
• scientific article; zbMATH DE number 7306910 (Why is no real title available?)
• Sparse directed acyclic graphs incorporating the covariates
• Estimation of directed subnetworks in ultra-high dimensional data for gene network problems
• High-dimensional Poisson structural equation model learning via \(\ell_1\)-regularized regression
• Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
• Penalized estimation of directed acyclic graphs from discrete data
• Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
• A review of multivariate distributions for count data derived from the Poisson distribution

Describes a project that uses

Uses Software

• Reactome
• DEseq
• LBFGS-B

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