Comparing segmentation methods for genome annotation based on RNA-seq data
DOI10.1007/S13253-013-0159-5zbMATH Open1303.62064OpenAlexW2030883275MaRDI QIDQ486163FDOQ486163
Authors: Alice Cleynen, Stéphane Robin, Sandrine Dudoit 
Publication date: 14 January 2015
Published in: Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s13253-013-0159-5
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count datachange-point detectionconfidence intervalsRNA-seqsegmentationnegative binomial distributiongenome annotation
Cites Work
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- A Cluster Analysis Method for Grouping Means in the Analysis of Variance
- Segmentation of the Poisson and negative binomial rate models: a penalized estimator
- Segmentation of the mean of heteroscedastic data via cross-validation
- Exact posterior distributions and model selection criteria for multiple change-point detection problems
- A Bayesian Analysis for Change Point Problems
- Denoising array-based comparative genomic hybridization data using wavelets
- Partition Regression
- Fast estimation of posterior probabilities in change-point analysis through a constrained hidden Markov model
Cited In (8)
- New efficient algorithms for multiple change-point detection with reproducing kernels
- ModHMM: a modular supra-Bayesian genome segmentation method
- Identifying atypically expressed chromosome regions using RNA-Seq data
- RNA Pol II transcription model and interpretation of GRO-seq data
- A breakpoint detection in the mean model with heterogeneous variance on fixed time intervals
- Nonparametric multiple change-point estimation for analyzing large Hi-C data matrices
- Consistency of a range of penalised cost approaches for detecting multiple changepoints
- Yanagi: transcript segment library construction for RNA-seq quantification
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