Statistical analysis of microbiome data with R

DOI10.1007/978-981-13-1534-3zbMath1407.62024MaRDI QIDQ1622658

Y. Aharonov

Publication date: 19 November 2018

Published in: ICSA Book Series in Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-981-13-1534-3

zbMATH Keywords

data analysis; statistical analysis; statistical modelling; big data; ecology; microbiome data

Mathematics Subject Classification ID

62-04: Software, source code, etc. for problems pertaining to statistics

62P10: Applications of statistics to biology and medical sciences; meta analysis

62-02: Research exposition (monographs, survey articles) pertaining to statistics

92D99: Genetics and population dynamics

Uses Software

• compositions
• R
• ggplot2
• vegan
• edgeR
• DEGseq
• GUniFrac
• limma
• RStudio
• robCompositions
• Phyloseq
• Voom
• DOTUR
• propr
• UrQt
• pplacer
• MDSINE
• MicrobiomeAnalyst
• MetamicrobiomeR
• HMP
• INMEX
• betapart
• NeatMap