robCompositions

swMATH11804CRANrobCompositionsMaRDI QIDQ23742

Compositional Data Analysis

Karel Hron, Peter Filzmoser, Matthias Templ

Last update: 25 August 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 2.3.1, 2.4.1

Source code repository: https://github.com/cran/robCompositions

Description

Methods for analysis of compositional data including robust methods (<doi:10.1007/978-3-319-96422-5>), imputation of missing values (<doi:10.1016/j.csda.2009.11.023>), methods to replace rounded zeros (<doi:10.1080/02664763.2017.1410524>, <doi:10.1016/j.chemolab.2016.04.011>, <doi:10.1016/j.csda.2012.02.012>), count zeros (<doi:10.1177/1471082X14535524>), methods to deal with essential zeros (<doi:10.1080/02664763.2016.1182135>), (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors, functional data analysis (<doi:10.1016/j.csda.2015.07.007>) and p-splines (<doi:10.1016/j.csda.2015.07.007>), contingency (<doi:10.1080/03610926.2013.824980>) and compositional tables (<doi:10.1111/sjos.12326>, <doi:10.1111/sjos.12223>, <doi:10.1080/02664763.2013.856871>) and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.

Cites work

• Applied Compositional Data Analysis
• Imputation of missing values for compositional data using classical and robust methods
• Regression imputation with Q-mode clustering for rounded zero replacement in high-dimensional compositional data
• Imputation of rounded zeros for high-dimensional compositional data
• Model-based replacement of rounded zeros in compositional data: Classical and robust approaches
• Bayesian-multiplicative treatment of count zeros in compositional data sets
• Exploratory tools for outlier detection in compositional data with structural zeros
• Simplicial principal component analysis for density functions in Bayes spaces
• Independence in Contingency Tables Using Simplicial Geometry
• General approach to coordinate representation of compositional tables
• Compositional Tables Analysis in Coordinates
• Logratio approach to statistical analysis of 2×2 compositional tables

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