A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
DOI10.1515/SAGMB-2015-0070zbMATH Open1343.92162OpenAlexW2292844980WikidataQ31050289 ScholiaQ31050289MaRDI QIDQ306683FDOQ306683
Authors: Zhixiang Lin, Mingfeng Li, Nenad Sestan, Hongyu Zhao
Publication date: 1 September 2016
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc5587217
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Cites Work
- Large-Scale Simultaneous Hypothesis Testing
- Title not available (Why is that?)
- EM procedures using mean field-like approximations for Markov model-based image segmentation
- A Markov random field-based approach to characterizing human brain development using spatial-temporal transcriptome data
- Quantifying alternative splicing from paired-end RNA-sequencing data
- A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data
- A hidden Markov random field model for genome-wide association studies
- Small-sample estimation of negative binomial dispersion, with applications to SAGE data
- The mean field theory in EM procedures for Markov random fields
Cited In (3)
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- A Markov random field-based approach to characterizing human brain development using spatial-temporal transcriptome data
- Homology cluster differential expression analysis for interspecies mRNA-seq experiments
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