\texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples

DOI10.1515/sagmb-2018-0050zbMath1445.92115OpenAlexW2983315729WikidataQ91308602 ScholiaQ91308602MaRDI QIDQ2195276

Tobias Madsen, Malene Juul, Michał Świtnicki, Jakob Skou Pedersen

Publication date: 8 September 2020

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2018-0050

zbMATH Keywords

empirical Bayesdifferential expressionprobabilistic modelingdifferential methylation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

Uses Software

• R
• Bioconductor
• Kernlab
• e1071
• caret
• limma
• randomForest
• ASCL
• Minfi
• arm
• ChAMP
• PINCAGE
• FastDMA
• DESeq2

Cites Work

• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Robust Statistics
• Unnamed Item

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