\texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples

DOI10.1515/SAGMB-2018-0050MaRDI QIDQ2195276zbMATH OpenOpenAlexWikidataFDO

Authors Tobias Madsen, Michał Świtnicki, Malene Juul, Jakob Skou Pedersen

Publication date 8 September 2020

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2018-0050

zbMATH Keywords

differential expressiondifferential methylationempirical Bayesprobabilistic modeling

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Medical applications (general) (92C50)

Recommendations

• A robust unified approach to analyzing methylation and gene expression data
• A nonparametric empirical Bayes approach to joint modeling of multiple sources of genomic data
• Bayesian Genome- and Epigenome-Wide Association Studies with Gene Level Dependence
• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types

Cites work

• scientific article; zbMATH DE number 837911 (Why is no real title available?)
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Robust Statistics

Cited in

(1)

• Percolate: an exponential family JIVE model to design DNA-based predictors of drug response

Describes a project that uses

Uses Software

• DESeq2
• e1071
• Minfi
• Bioconductor
• ASCL
• ChAMP
• FastDMA
• PINCAGE
• Kernlab
• R
• caret
• limma
• randomForest
• arm

This page was built for publication: \texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2195276)