Adaptive filtering increases power to detect differentially expressed genes

DOI10.1007/978-3-319-69416-0_8MaRDI QIDQ4556971zbMATH OpenOpenAlexFDO

Authors Zixin Nie, Kun Liang

Publication date 28 November 2018

Published in New Advances in Statistics and Data Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-69416-0_8

zbMATH Keywords

adaptive filtering

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Inference from stochastic processes and prediction (62M20)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• A Direct Approach to False Discovery Rates
• A Modified False Discovery Rate Multiple-Comparisons Procedure for Discrete Data, Applied to Human Immunodeficiency Virus Genetics
• A hidden Markov model approach to testing multiple hypotheses on a tree-transformed gene ontology graph
• Adaptive and Dynamic Adaptive Procedures for False Discovery Rate Control and Estimation
• Adaptive false discovery rate control under independence and dependence
• FDR control with pseudo-gatekeeping based on a possibly data driven order of the hypotheses
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Multiple hypothesis testing in microarray experiments.
• The control of the false discovery rate in multiple testing under dependency.

Cited in

(3)

• An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
• Detecting strong signals in gene perturbation experiments: an adaptive approach with power guarantee and FDR control
• Floating prioritized subset analysis: A powerful method to detect differentially expressed genes

Describes a project that uses

Uses Software

• Bioconductor
• gcrma
• fdrtool
• someMTP
• SimSeq

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