The positive false discovery rate: A Bayesian interpretation and the \(q\)-value

From MaRDI portal

Publication:1430922

Jump to:navigation, search

DOI10.1214/aos/1074290335zbMath1042.62026OpenAlexW2125905177WikidataQ56622264 ScholiaQ56622264MaRDI QIDQ1430922

John D. Storey

Publication date: 27 May 2004

Published in: The Annals of Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1214/aos/1074290335

zbMATH Keywords

multiple comparisons simultaneous inference \(p\)-values \(q\)-values pFDR pFNR

Mathematics Subject Classification ID

Parametric hypothesis testing (62F03) Bayesian inference (62F15) Paired and multiple comparisons; multiple testing (62J15)

Related Items

Detection of Local Differences in Spatial Characteristics Between Two Spatiotemporal Random Fields, The role of the p-value in the multitesting problem, Multiple testing with heterogeneous multinomial distributions, Omnibus testing and gene filtration in microarray data analysis, A Statistical Framework for eQTL Mapping Using RNA-seq Data, A Process Monitoring Scheme Controlling False Discovery Rate, Estimating the Proportion of True Null Hypotheses in Nonparametric Exponential Mixture Model with Appication to the Leukemia Gene Expression Data, Publication Policies for Replicable Research and the Community-Wide False Discovery Rate, Shrunken p‐Values for Assessing Differential Expression with Applications to Genomic Data Analysis, Optimization of Two‐Stage Genetic Designs Where Data Are Combined Using an Accurate and Efficient Approximation for Pearson's Statistic, On the d-posterior approach to the multiple testing problem, Unnamed Item, A Bayesian decision procedure for testing multiple hypotheses in DNA microarray experiments, Multiple Comparisons Controlling Expected Number of False Discoveries, Controlling the FDR in Imperfect Matches to an Incomplete Database, Multiple hypothesis tests based On conditional differences in means, A statistical methodology to select covariates in high-dimensional data under dependence. Application to the classification of genetic profiles in oncology, Joint Mean and Covariance Estimation with Unreplicated Matrix-Variate Data, Unnamed Item, Distributed eQTL analysis with auxiliary information, On the bias and variance of odds ratio, relative risk and false discovery proportion, Accurate error control in high‐dimensional association testing using conditional false discovery rates, Signal localization: a new approach in signal discovery, Two-Component Mixture Model in the Presence of Covariates, More Powerful and Reliable Second-Level Statistical Randomness Tests for NIST SP 800-22, Non-Experimental Data, Hypothesis Testing, and the Likelihood Principle: A Social Science Perspective, Statistical proof? The problem of irreproducibility, False Discovery Rate Control via Data Splitting, Replicability across multiple studies, Estimating the proportion of signal variables under arbitrary covariance dependence, Robust high-dimensional tuning free multiple testing, A Bayesian method for estimating gene‐level polygenicity under the framework of transcriptome‐wide association study, Maximum likelihood estimation of the log-concave component in a semi-parametric mixture with a standard normal density, Expected Power for the False Discovery Rate with Independence, Evaluation of false discovery rate and power via sample size in microarray studies, α-Investing: a Procedure for Sequential Control of Expected False Discoveries, An Efficient Morris Method-Based Framework for Simulation Factor Screening, Multiple testing on standardized mortality ratios: a Bayesian hierarchical model for FDR estimation, Rejoinder, Wavelet Thresholding with Bayesian False Discovery Rate Control, Bayesian Methods for Examining Hardy-Weinberg Equilibrium, A multiple testing protocol for exploratory data analysis and the local misclassification rate, Bayesian Analysis of Multiple Hypothesis Testing with Applications to Microarray Experiments, The Positive False Discovery Quantile, Multiple Testing of Composite Null Hypotheses in Heteroscedastic Models, Estimation of False Discovery Rate Using Sequential Permutation p‐Values, Semiparametric Bayes Multiple Testing: Applications to Tumor Data, Binary classification with pFDR‐pFNR losses, Multiple testing using the posterior probabilities of directional alternatives, with application to genomic studies, Bayesian Robustness of the Positive False Discovery Rate, Assessing Differential Gene Expression with Small Sample Sizes in Oligonucleotide Arrays Using a Mean‐Variance Model, Enhanced Quantile Normalization of Microarray Data to Reduce Loss of Information in Gene Expression Profiles, Contaminated normal modeling with application to microarray data analysis, Bootstrapping in a high dimensional but very low-sample size problem, Some Results on the Control of the False Discovery Rate under Dependence, Confidence intervals for prediction intervals, A Simple Diagnostic Plot Connecting Robust Estimation, Outlier Detection, and False Discovery Rates, Estimating the False Discovery Rate Using Nonparametric Deconvolution, A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion, Nonparametric Bayesian Estimation of Positive False Discovery Rates, On empirical distribution function of high-dimensional Gaussian vector components with an application to multiple testing, A hierarchical Bayesian approach to multiple testing in disease mapping, AAPL: assessing association between p‐value lists, FORMALIZED DATA SNOOPING BASED ON GENERALIZED ERROR RATES, Statistical Methods for Expression Quantitative Trait Loci (eQTL) Mapping, Generalized Species Sampling Priors With Latent Beta Reinforcements, Spatially Dependent Multiple Testing Under Model Misspecification, With Application to Detection of Anthropogenic Influence on Extreme Climate Events, Data Volume and Power of Multiple Tests with Small Sample Size Per Null, RandomisedP-values and nonparametric procedures in multiple testing, Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles, A Statistical Procedure for Detecting Highly Correlated Genes with a Pre-Specified Candidate Gene in Microarray Analysis, Testing Three-factor Interaction in Unreplicated Three-way Layouts, Post-Selection Inference Following Aggregate Level Hypothesis Testing in Large-Scale Genomic Data, Approaches to multiplicity issues in complex research in microarray analysis, A Decision‐Theory Approach to Interpretable Set Analysis for High‐Dimensional Data, Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes, An Introduction to Second-Generation p-Values, A Positive False Discovery Rate Convergence Result, On the usage of randomized p-values in the Schweder-Spjøtvoll estimator, Finite skew-mixture models for estimation of positive false discovery rates, Null-free false discovery rate control using decoy permutations, A stochastic process approach to false discovery control., On correlated \(z\)-values distribution in hypothesis testing, A two-component nonparametric mixture model with stochastic dominance, An exploration of aspects of Bayesian multiple testing, Predictive density and conditional confidence interval accuracy tests, Exact post-selection inference, with application to the Lasso, Prior distributions for objective Bayesian analysis, Bayesian spatiotemporal modeling using hierarchical spatial priors, with applications to functional magnetic resonance imaging (with discussion), Empirical Bayes cumulative \(\ell\)-value multiple testing procedure for sparse sequences, Powerful multiple testing of paired null hypotheses using a latent graph model, Differential methylation tests of regulatory regions, Objective Bayesian edge screening and structure selection for Ising networks, Bayesian state space models for dynamic genetic network construction across multiple tissues, Explicit formulas for generalized family-wise error rates and unimprovable step-down multiple testing procedures, Empirical estimation of \(d\)-risks at distinguishing one-sided hypotheses, Simultaneous testing of multiple hypotheses using generalized \(p\)-values, No pain, no gain: you should always incorporate trading costs for a bias-free evaluation of trading rule overperformance, Estimation of the proportion of true null hypotheses in high-dimensional data under dependence, A double application of the Benjamini-Hochberg procedure for testing batched hypotheses, A scoring criterion for rejection of clustered \(p\)-values, Inference for the mean of large \(p\) small \(n\) data: a finite-sample high-dimensional generalization of Hotelling's theorem, Bayesian estimation of differential transcript usage from RNA-seq data, Strong consistency and asymptotic normality for quantities related to the Benjamini-Hochberg false discovery rate procedure, False discovery rate for functional data, An empirical Bayes optimal discovery procedure based on semiparametric hierarchical mixture models, Randomized \(p\)-values for multiple testing of composite null hypotheses, Testing multivariate economic restrictions using quantiles: the example of Slutsky negative semidefiniteness, From genome-scale data to models of infectious disease: a Bayesian network-based strategy to drive model development, Variational discriminant analysis with variable selection, Testing for neglected nonlinearity using artificial neural networks with many randomized hidden unit activations, Dynamic adaptive multiple tests with finite sample FDR control, A method for modifying multiple testing procedures, Estimation of empirical null using a mixture of normals and its use in local false discovery rate, Power-enhanced multiple decision functions controlling family-wise error and false discovery rates, Exact calculations for false discovery proportion with application to least favorable configura\-tions, A guided random walk through some high dimensional problems, Power, FDR and conservativeness of BB-SGoF method, Adaptive combination of dependent tests, Simultaneous critical values for \(t\)-tests in very high dimensions, Bayes multiple decision functions, Some optimality properties of FDR controlling rules under sparsity, Asymptotic Bayes-optimality under sparsity of some multiple testing procedures, Bootstrap inference for network construction with an application to a breast cancer microarray study, Frequentist properties of Bayesian multiplicity control for multiple testing of normal means, Asymptotic properties of false discovery rate controlling procedures under independence, The false discovery rate for statistical pattern recognition, Optimal weighting for false discovery rate control, Automated analysis of quantitative image data using isomorphic functional mixed models, with application to proteomics data, Compound \(p\)-value statistics for multiple testing procedures, Mutual fund performance: false discoveries, bias, and power, An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data, Error rates for multivariate outlier detection, On spike and slab empirical Bayes multiple testing, Test-statistic correlation and data-row correlation, Measuring reproducibility of high-throughput experiments, Non-marginal decisions: a novel Bayesian multiple testing procedure, Tail approximations for the Student \(t\)-, \(F\)-, and Welch statistics for non-normal and not necessarily i.i.d. random variables, On the performance of FDR control: constraints and a partial solution, Asymptotic theory of dependent Bayesian multiple testing procedures under possible model misspecification, Symmetric directional false discovery rate control, A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment, Discussion on the paper by Professor Wu, A look at multiplicity through misclassification, Stepup procedures controlling generalized FWER and generalized FDR, On estimating the proportion of true null hypotheses for false discovery rate controlling procedures in exploratory DNA microarray studies, Simultaneous control of false positives and false negatives in multiple hypotheses testing, Beyond panel unit root tests: using multiple testing to determine the nonstationarity properties of individual series in a panel, A mixture model approach for the analysis of small exploratory microarray experiments, Inference on low-rank data matrices with applications to microarray data, False discovery and false nondiscovery rates in single-step multiple testing procedures, The false discovery rate: a variable selection perspective, Object detection in multi-epoch data, Bayesian decision theoretic approach to hypothesis problems with skewed alternatives, Uniformly consistently estimating the proportion of false null hypotheses via Lebesgue-Stieltjes integral equations, Order thresholding, Modeling rare events through a \(p\)RARMAX process, Estimation of the mean value for the normal distribution with constraints on \(d\)-risk, A geometric interpretation of the permutation \(p\)-value and its application in eQTL studies, Modified Simes' critical values under positive dependence, Empirical null and false discovery rate inference for exponential families, Species Sampling Priors for Modeling Dependence: An Application to the Detection of Chromosomal Aberrations, Spatial Boundary Detection for Areal Counts, LOPSIDED REASONING ON LOPSIDED TESTS AND MULTIPLE COMPARISONS, Multiple testing for neuroimaging via hidden Markov random field, Replicability analysis for genome-wide association studies, On false discovery rate thresholding for classification under sparsity, Efficient and robust density estimation using Bernstein type polynomials, A changepoint statistic with uniform type I error probabilities, Comments on: Control of the false discovery rate under dependence using the bootstrap and subsampling, Comparison of Bayesian and frequentist multiplicity correction for testing mutually exclusive hypotheses under data dependence, More powerful control of the false discovery rate under dependence, RADIOHEAD: radiogenomic analysis incorporating tumor heterogeneity in imaging through densities, A note on multiple testing for composite null hypotheses, General power and sample size calculations for high-dimensional genomic data, Conditional calibration for false discovery rate control under dependence, Probabilistic inference for multiple testing, New multiple testing method under no dependency assumption, with application to multiple comparisons problem

Cites Work

Retrieved from "https://portal.mardi4nfdi.de/w/index.php?title=Publication:1430922&oldid=13600063"