Empirical Bayes Analysis of a Microarray Experiment
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Publication:4468321
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Cited in
(only showing first 100 items - show all)- Single-index modulated multiple testing
- Comment: ``Microarrays, empirical Bayes and the two-groups model
- Empirical Bayes Estimation of a Sparse Vector of Gene Expression Changes
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- Bayesian Modeling of Differential Gene Expression
- An optimal procedure for multiple hypotheses testing
- Expected Power for the False Discovery Rate with Independence
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- Interval estimation for messy observational data
- A semi-parametric approach for mixture models: application to local false discovery rate estimation
- Empirical Bayes estimates for large-scale prediction problems
- Assessing Differential Gene Expression with Small Sample Sizes in Oligonucleotide Arrays Using a Mean‐Variance Model
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- Comments on: Optimization and data mining in medicine
- The false discovery rate for statistical pattern recognition
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- A Bayesian approach for decision making on the identification of genes with different expression levels: an application to Escherichia coli bacterium data
- A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment
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- Empirical Bayes Microarray ANOVA and Grouping Cell Lines by Equal Expression Levels
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- DNA microarray experiments: biological and technological aspects
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- Inference after checking multiple Bayesian models for data conflict and applications to mitigating the influence of rejected priors
- Comment: ``Microarrays, empirical Bayes and the two-group model
- Confidence Intervals for Nonparametric Empirical Bayes Analysis
- Multiple testing on standardized mortality ratios: a Bayesian hierarchical model for FDR estimation
- Frequentist-Bayesian Monte Carlo test for mean vectors in high dimension
- Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation
- False discovery and false nondiscovery rates in single-step multiple testing procedures
- Bayesian ranking and selection methods using hierarchical mixture models in microarray studies
- Bayesian analysis of multiple hypothesis testing with applications to microarray experiments
- A clarifying comparison of methods for controlling the false discovery rate
- Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments
- Strong consistency and asymptotic normality for quantities related to the Benjamini-Hochberg false discovery rate procedure
- False discovery rates in somatic mutation studies of cancer
- Inequalities for the false discovery rate (FDR) under dependence
- MAOSA: A new procedure for detection of differential gene expression
- Bayesian tests for composite alternative hypotheses in cross-tabulated data
- Statistical challenges in functional genomics. (With comments and a rejoinder).
- Application of skew-normal distribution for detecting differential expression to microRNA data
- Compound \(p\)-value statistics for multiple testing procedures
- A flexible approximate likelihood ratio test for detecting differential expression in microarray data
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- Empirical Bayes analysis of unreplicated microarray data
- Comparison of various statistical methods for identifying differential gene expression in replicated microarray data
- A multivariate empirical Bayes statistic for replicated microarray time course data
- Stochastic approximation and Newton's estimate of a mixing distribution
- Searching for differential expression: a non-parametric approach
- A look at multiplicity through misclassification
- Null Hypothesis Significance Testing Interpreted and Calibrated by Estimating Probabilities of Sign Errors: A Bayes-Frequentist Continuum
- False discovery rate control with multivariate \(p\)-values
- A high-dimensional two-sample test for the mean using random subspaces
- Robust semiparametric optimal testing procedure for multiple normal means
- Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles
- Balancing type one and two errors in multiple testing for differential expression of genes
- Distributions associated with simultaneous multiple hypothesis testing
- A new efficient statistical test for detecting variability in the gene expression data
- On the performance of FDR control: constraints and a partial solution
- Sample size calculation for a regularized \(t\)-statistic in microarray experiments
- Global testing under sparse alternatives: ANOVA, multiple comparisons and the higher criticism
- Adjusting batch effects in microarray expression data using empirical Bayes methods
- Comment
- Probabilistic inference for multiple testing
- Proportion of Non-Zero Normal Means: Universal Oracle Equivalences and Uniformly Consistent Estimators
- An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
- Mutual fund performance: false discoveries, bias, and power
- Simultaneous and selective inference: Current successes and future challenges
- Genome-wide significance levels and weighted hypothesis testing
- Powerful multiple testing of paired null hypotheses using a latent graph model
- A Bayesian Mixture Model for Differential Gene Expression
- Mixture Model on the Variance for the Differential Analysis of Gene Expression Data
- Tilting methods for assessing the influence of components in a classifier
- Strong Control, Conservative Point Estimation and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach
- Statistical Methods for Expression Quantitative Trait Loci (eQTL) Mapping
- An exploration of aspects of Bayesian multiple testing
- A Simple Diagnostic Plot Connecting Robust Estimation, Outlier Detection, and False Discovery Rates
- Unsupervised empirical Bayesian multiple testing with external covariates
- A Direct Approach to False Discovery Rates
- Dynamic adaptive multiple tests with finite sample FDR control
- Robbins, empirical Bayes and microarrays
- Size, power and false discovery rates
- Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation
- Multiple testing of composite null hypotheses in heteroscedastic models
- Large-scale multiple testing under dependence
- False Discovery Rate Control Under General Dependence By Symmetrized Data Aggregation
- Joint adaptive mean-variance regularization and variance stabilization of high dimensional data
- Asymptotic Bayes-optimality under sparsity of some multiple testing procedures
- A method for modifying multiple testing procedures
- Bayesian decision theoretic approach to hypothesis problems with skewed alternatives
- Decision theory results for one-sided multiple comparison procedures
- Laplace approximated EM microarray analysis: an empirical Bayes approach for comparative microarray experiments
- Randomised \(P\)-values and nonparametric procedures in multiple testing
- Simultaneous critical values for \(t\)-tests in very high dimensions
- Power-enhanced multiple decision functions controlling family-wise error and false discovery rates
- An empirical Bayes mixture method for effect size and false discovery rate estimation
- The positive false discovery rate: A Bayesian interpretation and the \(q\)-value
- False discovery rate analysis of brain diffusion direction maps
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