Empirical Bayes Analysis of a Microarray Experiment
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Cited in
(only showing first 100 items - show all)- Sample size calculation for a regularized \(t\)-statistic in microarray experiments
- Bayesian nonparametric multiple testing
- Assessing Differential Gene Expression with Small Sample Sizes in Oligonucleotide Arrays Using a Mean‐Variance Model
- Genome-wide significance levels and weighted hypothesis testing
- Transformations, background estimation, and process effects in the statistical analysis of microarrays
- Stable classification with applications to microarray data
- A comprehensive error rate for multiple testing
- Game-theoretic probability combination with applications to resolving conflicts between statistical methods
- Large-scale signal detection: a unified perspective
- A cross-validation based estimation of the proportion of true null hypotheses
- More powerful control of the false discovery rate under dependence
- Bayesian analysis of multiple hypothesis testing with applications to microarray experiments
- Spatially dependent multiple testing under model misspecification, with application to detection of anthropogenic influence on extreme climate events
- A modified two-sample t-test based on permutation method for large-scale data
- Multiple testing in genome-wide association studies via hierarchical hidden Markov models
- Multiple testing for exploratory research
- A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion
- Efficient sparse high-dimensional linear regression with a partitioned empirical Bayes ECM algorithm
- Detection boundary and higher criticism approach for rare and weak genetic effects
- New multiple testing method under no dependency assumption, with application to multiple comparisons problem
- Uniformly consistent proportion estimation for composite hypotheses via integral equations: ``the case of Gamma random variables
- False Discovery Rate Control via Data Splitting
- Robust test for detecting a signal in a high dimensional sparse normal vector
- A two-stage empirical Bayes method for identifying differentially expressed genes
- A mixture model approach for the analysis of small exploratory microarray experiments
- A robust unified approach to analyzing methylation and gene expression data
- Microarrays, empirical Bayes and the two-groups model
- Where to find needles in a haystack?
- Cluster analysis using multivariate normal mixture models to detect differential gene expression with microarray data
- False discovery rate control with unknown null distribution: is it possible to mimic the oracle?
- Empirical Bayes analysis of RNA sequencing experiments with auxiliary information
- On empirical distribution function of high-dimensional Gaussian vector components with an application to multiple testing
- Sparse high-dimensional linear mixed modeling with a partitioned empirical Bayes ECM algorithm
- An empirical Bayes mixture method for effect size and false discovery rate estimation
- A new efficient statistical test for detecting variability in the gene expression data
- Nonparametric Bayesian Estimation of Positive False Discovery Rates
- Semiparametric Regression of Multidimensional Genetic Pathway Data: Least‐Squares Kernel Machines and Linear Mixed Models
- Regularized t t distribution: definition, properties, and applications
- A stochastic process approach to false discovery control.
- An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
- Empirical null and false discovery rate inference for exponential families
- Local false discovery rate estimation with competition-based procedures for variable selection
- Large-scale multiple testing via multivariate hidden Markov models
- Ridge estimation of inverse covariance matrices from high-dimensional data
- A high-dimensional two-sample test for the mean using random subspaces
- An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
- On spike and slab empirical Bayes multiple testing
- A nested mixture model for protein identification using mass spectrometry
- Optimal control of directional false discovery rates in large-scale testing
- An extension of the \(K\)-means algorithm to clustering skewed data
- Asymptotic Bayes-optimality under sparsity of some multiple testing procedures
- On the performance of FDR control: constraints and a partial solution
- Smooth and Probabilistic PARAFAC Model with Auxiliary Covariates
- Powerful multiple testing of paired null hypotheses using a latent graph model
- False Discovery Rate Control For Structured Multiple Testing: Asymmetric Rules And Conformal Q -values
- Detecting mutations in mixed sample sequencing data using empirical Bayes
- An inverse Laplace transform oracle estimator for the normal means problem
- Large-scale dependent multiple testing via hidden semi-Markov models
- Comment: ``Microarrays, empirical Bayes and the two-groups model
- GMM-based procedure for multiple hypotheses testing
- Gene expression associations with the growth inhibitory effects of small molecules on live cells: Specificity of effects and uniformity of mechanisms
- Comparison of various statistical methods for identifying differential gene expression in replicated microarray data
- Bayesian decision theoretic approach to hypothesis problems with skewed alternatives
- Replicability across multiple studies
- The Clustering of Regression Models Method with Applications in Gene Expression Data
- Bayesian nonparametric variable selection as an exploratory tool for discovering differentially expressed genes
- Empirical Bayes ranking and selection methods via semiparametric hierarchical mixture models in microarray studies
- Optimal rates of convergence for estimating the null density and proportion of nonnull effects in large-scale multiple testing
- Multiple testing on standardized mortality ratios: a Bayesian hierarchical model for FDR estimation
- Bayesian ranking and selection methods using hierarchical mixture models in microarray studies
- A method for modifying multiple testing procedures
- A new perspective on robust \(M\)-estimation: finite sample theory and applications to dependence-adjusted multiple testing
- The positive false discovery rate: A Bayesian interpretation and the \(q\)-value
- Empirical Bayes Confidence Intervals for Means of Natural Exponential Family‐Quadratic Variance Function Distributions with Application to Small Area Estimation
- Optimal weighting for false discovery rate control
- Bayesian variable selection using Knockoffs with applications to genomics
- Adaptive novelty detection with false discovery rate guarantee
- Estimating the null distribution to adjust observed confidence levels for genome-scale screening
- A multiple testing protocol for exploratory data analysis and the local misclassification rate
- An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data
- Generalized estimating equations by considering additive terms for analyzing time-course gene sets data
- Adjusted regularization in latent graphical models: application to multiple-neuron spike count data
- Adjusted regularization of cortical covariance
- Data Volume and Power of Multiple Tests with Small Sample Size Per Null
- Estimation of the proportion of true null hypotheses in high-dimensional data under dependence
- A Statistical Framework for Expression-Based Molecular Classification in Cancer
- Adaptive linear step-up multiple testing procedure with the bias-reduced estimator
- Order thresholding
- Null-free false discovery rate control using decoy permutations
- An empirical Bayes change-point model for transcriptome time-course data
- An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
- MAOSA: A new procedure for detection of differential gene expression
- Local comparison of empirical distributions via nonparametric regression
- Properties of higher criticism under strong dependence
- Adapting to unknown sparsity by controlling the false discovery rate
- Bayesian growth curve model useful for high-dimensional longitudinal data
- False discovery rate control for grouped or discretely supported p-values with application to a neuroimaging study
- Unification of rare and weak multiple testing models using moderate deviations analysis and log-chisquared P-values
- Application of skew-normal distribution for detecting differential expression to microRNA data
- High-dimensional influence measure
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