Improved Detection of Differentially Expressed Genes Through Incorporation of Gene Locations

DOI10.1111/J.1541-0420.2008.01161.XMaRDI QIDQ3183221zbMATH OpenOpenAlexWikidataFDO

Authors Guanghua Xiao, Cavan Reilly, Arkady B. Khodursky

Publication date 19 October 2009

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/j.1541-0420.2008.01161.x

zbMATH Keywords

hidden Markov modelgene expressionspatial smoothingautocorrelation function

Mathematics Subject Classification ID

Bayesian inference (62F15) Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Inference from spatial processes (62M30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 3565994 (Why is no real title available?)
• Bayes and empirical Bayes methods for data analysis.
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Empirical Bayes Analysis of a Microarray Experiment
• Inference from iterative simulation using multiple sequences
• Informative Drop-Out in Longitudinal Data Analysis
• Significance analysis of microarrays applied to the ionizing radiation response
• Statistical analysis of microarray data: a Bayesian approach

Cited in

(9)

• Fast methods for spatially correlated multilevel functional data
• Improving the power to detect differentially expressed genes in comparative microarray experiments by including information from self-self hybridizations
• A Bayesian mark interaction model for analysis of tumor pathology images
• A new framework for identifying differentially expressed genes
• Modeling three-dimensional chromosome structures using gene expression data
• Determining and analyzing differentially expressed genes from cDNA microarray experiments with complementary designs
• Combined amplification and molecular classification for gene expression diagnostics
• Sampling Strategies for Fast Updating of Gaussian Markov Random Fields
• Leveraging external knowledge on molecular interactions in classification methods for risk prediction of patients

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