A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment

DOI10.1214/07-AOAS118zbMath1126.62110arXiv0712.1124MaRDI QIDQ2466472

Susan M. Kaech, Ming Yuan, M. Elizabeth Halloran, Hai-Yan Wu

Publication date: 15 January 2008

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0712.1124

zbMATH Keywords

empirical Bayeshidden Markov modelmicroarraysgene expression profilestime course

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50) Empirical decision procedures; empirical Bayes procedures (62C12)

Related Items (4)

The importance of distinct modeling strategies for gene and gene-specific treatment effects in hierarchical models for microarray data ⋮ Assessing multivariate predictors of financial market movements: A latent factor framework for ordinal data ⋮ Profiling the effects of short time-course cold ischemia on tumor protein phosphorylation using a Bayesian approach ⋮ A Markov random field-based approach to characterizing human brain development using spatial-temporal transcriptome data

Uses Software

• EBarrays
• SVDMAN

Cites Work

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• A multivariate empirical Bayes statistic for replicated microarray time course data
• The positive false discovery rate: A Bayesian interpretation and the \(q\)-value
• Multiple hypothesis testing in microarray experiments.
• Hidden Markov Models for Microarray Time Course Data in Multiple Biological Conditions
• Empirical Bayes Analysis of a Microarray Experiment
• Sequential Monte Carlo Methods for Dynamic Systems
• A Direct Approach to False Discovery Rates
• Multiple Hypothesis Testing by Clustering Treatment Effects
• A Bayesian Mixture Model for Partitioning Gene Expression Data
• Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• A Quantitative Study of Gene Regulation Involved in the Immune Response of Anopheline Mosquitoes
• Bayesian clustering by dynamics

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