Transformations, background estimation, and process effects in the statistical analysis of microarrays

DOI10.1016/S0167-9473(03)00069-0MaRDI QIDQ956764zbMATH OpenOpenAlexFDO

Authors Karen Kafadar, Tzulip Phang

Publication date 26 November 2008

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0167-9473(03)00069-0

zbMATH Keywords

smoothinglognormal distributionfluorescencebackground variationmedian Polishprocess variationTukey's g-family of distributions

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 3637090 (Why is no real title available?)
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• scientific article; zbMATH DE number 1750184 (Why is no real title available?)
• scientific article; zbMATH DE number 1903408 (Why is no real title available?)
• A Two-Component Model for Measurement Error in Analytical Chemistry
• Analysis of Data From Viral DNA Microchips
• Empirical Bayes Analysis of a Microarray Experiment
• Experimental design for gene expression microarrays
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• On Transformations Used in the Analysis of Variance
• Significance analysis of microarrays applied to the ionizing radiation response

Cited in

(10)

• Microarray data analysis in affymetrix gene chip
• Cluster analysis using multivariate normal mixture models to detect differential gene expression with microarray data
• COMPARISON OF DIFFERENT METHODOLOGIES TO IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN TWO-SAMPLE cDNA MICROARRAYS
• Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
• A statistical framework for the analysis of microarray probe-level data
• DNA microarray experiments: biological and technological aspects
• Analyzing multiple-probe microarray: estimation and application of gene expression indexes
• Identifying differentially expressed genes in dye-swapped microarray experiments of small sample size
• The changing focus of microarray analysis
• Transformations for cDNA Microarray Data

Describes a project that uses

Uses Software

• sma
• Affymetrix

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