Transformations, background estimation, and process effects in the statistical analysis of microarrays

DOI10.1016/S0167-9473(03)00069-0zbMATH Open1429.62553OpenAlexW2121143854MaRDI QIDQ956764FDOQ956764

Authors: Karen Kafadar, Tzulip Phang 

Publication date: 26 November 2008

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/s0167-9473(03)00069-0

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zbMATH Keywords

smoothinglognormal distributionfluorescencebackground variationmedian Polishprocess variationTukey's g-family of distributions

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

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• Empirical Bayes Analysis of a Microarray Experiment
• Significance analysis of microarrays applied to the ionizing radiation response
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• A Two-Component Model for Measurement Error in Analytical Chemistry
• Title not available (Why is that?)
• Experimental design for gene expression microarrays
• On Transformations Used in the Analysis of Variance
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Analysis of Data From Viral DNA Microchips

Cited In (10)

• Microarray data analysis in affymetrix gene chip
• Cluster analysis using multivariate normal mixture models to detect differential gene expression with microarray data
• COMPARISON OF DIFFERENT METHODOLOGIES TO IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN TWO-SAMPLE cDNA MICROARRAYS
• Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
• A statistical framework for the analysis of microarray probe-level data
• DNA microarray experiments: biological and technological aspects
• Analyzing multiple-probe microarray: estimation and application of gene expression indexes
• Identifying differentially expressed genes in dye-swapped microarray experiments of small sample size
• The changing focus of microarray analysis
• Transformations for cDNA Microarray Data

Uses Software

• Affymetrix
• sma

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