Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations

DOI10.1073/PNAS.97.18.9834zbMATH Open0955.92016OpenAlexW2065912508WikidataQ33915649 ScholiaQ33915649MaRDI QIDQ4528246FDOQ4528246

Authors: Frank C. Kuo, Jeffrey Sklar, Mei-Ling Ting Lee, G. A. Whitmore 

Publication date: 31 January 2001

Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1073/pnas.97.18.9834

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zbMATH Keywords

replicationgene expression datahybridizationmRNAcDNA microarrays

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Cited In (32)

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• Transformations, background estimation, and process effects in the statistical analysis of microarrays
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• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• Comparison of various statistical methods for identifying differential gene expression in replicated microarray data
• A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays
• A Statistical Framework for Expression-Based Molecular Classification in Cancer
• Statistical challenges in functional genomics. (With comments and a rejoinder).
• Approaches to multiplicity issues in complex research in microarray analysis
• Size, power and false discovery rates
• Recent developments in expectation-maximization methods for analyzing complex data
• A statistical framework for the analysis of microarray probe-level data
• Hadamard matrix methods in identifying differentially expressed genes from microarray experi\-ments
• DNA microarray experiments: biological and technological aspects
• Estimating the False Discovery Rate Using Nonparametric Deconvolution
• Statistical metrics for quality assessment of high-density tiling array data
• Optimal design for high-throughput screening via false discovery rate control
• Evaluation of false discovery rate and power via sample size in microarray studies
• Multivariate approach for selecting sets of differentially expressed genes
• Mixture of linear mixed models for clustering gene expression profiles from repeated microarray experiments
• A nested unsupervised approach to identifying novel molecular subtypes
• Empirical Bayes analysis of unreplicated microarray data
• Mining order-preserving submatrices from probabilistic matrices
• Quantitative noise analysis for gene expression microarray experiments
• Variable selection and pattern recognition with gene expression data generated by the microarray technology
• Nonparametric analysis of replicated microarray experiments
• Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments
• Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experi\-ments.
• Statistical Reconstruction of Transcription Factor Activity Using Michaelis–Menten Kinetics
• A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference

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