DNA microarray experiments: biological and technological aspects

DOI10.1111/J.0006-341X.2002.00701.XzbMATH Open1210.62197OpenAlexW2126226510WikidataQ34166262 ScholiaQ34166262MaRDI QIDQ3079014FDOQ3079014

Authors Danh V. Nguyen, A. Bulak Arpat, Naisyin Wang, Raymond J. Carroll 

Publication date 1 March 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/j.0006-341x.2002.00701.x

zbMATH Keywords

design of experimentsgene expressionmicroarrayvariabilityimage processingtranscriptionnormalizationmolecular biologycDNAoligonucleotidereverse transcriptionaffymetrixnucleotide labeling

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

• COMPARISON OF DIFFERENT METHODOLOGIES TO IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN TWO-SAMPLE cDNA MICROARRAYS
• Transformations, background estimation, and process effects in the statistical analysis of microarrays
• Gene Expression Studies Using Affymetrix Microarrays
• A method of microarray data storage using array data type
• Comparison of various statistical methods for identifying differential gene expression in replicated microarray data

• Empirical Bayes Analysis of a Microarray Experiment
• Experimental design for gene expression microarrays
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• Significance analysis of microarrays applied to the ionizing radiation response

(25)

• Dimension reduction of gene expression data
• Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
• Multiple-Testing Strategy for Analyzing cDNA Array Data on Gene Expression
• Distribution modeling and simulation of gene expression data
• Designs with blocks of size two and applications to microarray experiments
• MDSM: microarray database schema matching using the Hungarian method
• Gene profiling for determining pluripotent genes in a time course microarray experiment
• Exploiting blank spots for model-based background correction in discovering genes with DNA array data
• The Clustering of Regression Models Method with Applications in Gene Expression Data
• Liquid chromatography mass spectrometry-based proteomics: biological and technological as\-pects
• Variances are not always nuisance parameters
• Best subset selection, persistence in high-dimensional statistical learning and optimization under \(l_1\) constraint
• Statistical methods for the analysis of high-throughput data based on functional profiles derived from the Gene Ontology
• Bayesian Modeling of Differential Gene Expression
• A method of microarray data storage using array data type
• On partial least squares dimension reduction for microarray-based classification: a simulation study
• Pareto simulated annealing for the design of experiments: illustrated by a gene expression study
• Time-course data prediction for repeatedly measured gene expression
• Using GWAS data to identify copy number variants contributing to common complex diseases
• Partial least squares dimension reduction for microarray gene expression data with a censored response
• Design Considerations for Efficient and Effective Microarray Studies
• Variance estimation in the analysis of microarray data
• Survival prediction using gene expression data: a review and comparison
• Optimal factorial designs for CDNA microarray experiments
• On estimating the proportion of true null hypotheses for false discovery rate controlling procedures in exploratory DNA microarray studies

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