Survival prediction using gene expression data: a review and comparison

DOI10.1016/j.csda.2008.05.021zbMath1453.62225OpenAlexW2031821463MaRDI QIDQ961312

Regina Hampel, David Kun, Wessel N. van Wieringen, Anne-Laure Boulesteix

Publication date: 30 March 2010

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.csda.2008.05.021

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Related Items (18)

A new variable selection approach using random forests ⋮ Enhancing the lasso approach for developing a survival prediction model based on gene expression data ⋮ A survival tree based on stabilized score tests for high-dimensional covariates ⋮ Bayesian ridge regression for survival data based on a vine copula-based prior ⋮ Unnamed Item ⋮ Sufficient dimension reduction on marginal regression for gaps of recurrent events ⋮ An overview of techniques for linking high‐dimensional molecular data to time‐to‐event endpoints by risk prediction models ⋮ Assessment of evaluation criteria for survival prediction from genomic data ⋮ Editorial: Statistical genetics \& statistical genomics: where biology, epistemology, statistics, and computation collide ⋮ Efficient approximate k‐fold and leave‐one‐out cross‐validation for ridge regression ⋮ A two-component Weibull mixture to model early and late mortality in a Bayesian framework ⋮ Sparse classification with paired covariates ⋮ Testing the prediction error difference between 2 predictors ⋮ High-Dimensional Cox Models: The Choice of Penalty as Part of the Model Building Process ⋮ L₁Penalized Estimation in the Cox Proportional Hazards Model ⋮ An efficient algorithm for joint feature screening in ultrahigh-dimensional Cox's model ⋮ The Dantzig Selector in Cox's Proportional Hazards Model ⋮ Network-based survival analysis to discover target genes for developing cancer immunotherapies and predicting patient survival

Uses Software

• rda
• WilcoxCV
• CASPAR

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Bagging predictors
• PLS generalised linear regression
• An overview on the shrinkage properties of partial least squares regression
• Partial least squares dimension reduction for microarray gene expression data with a censored response
• Survival analysis. Techniques for censored and truncated data.
• Survival analysis of microarray expression data by transformation models
• DNA Microarray Experiments: Biological and Technological Aspects
• Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited
• Survival ensembles
• Regression Trees for Censored Data
• A note on a general definition of the coefficient of determination
• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• The Peculiar Shrinkage Properties of Partial Least Squares Regression
• STABILITY ANALYSIS FOR DELAYED CELLULAR NEURAL NETWORKS BASED ON LINEAR MATRIX INEQUALITY APPROACH
• Regularization and Variable Selection Via the Elastic Net
• Efficient quadratic regularization for expression arrays
• Bayesian Error‐in‐Variable Survival Model for the Analysis of GeneChip Arrays
• Prediction by Supervised Principal Components

This page was built for publication: Survival prediction using gene expression data: a review and comparison