Problems in gene clustering based on gene expression data

DOI10.1016/J.JMVA.2004.02.011MaRDI QIDQ1876980zbMATH OpenOpenAlexWikidataFDO

Authors Jennifer Bryan

Publication date 16 August 2004

Published in Journal of Multivariate Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jmva.2004.02.011

zbMATH Keywords

MicroarraysBootstrapCluster analysisConfidence

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Recommendations

• scientific article; zbMATH DE number 1750189
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Cites work

• scientific article; zbMATH DE number 1750183 (Why is no real title available?)
• scientific article; zbMATH DE number 3374820 (Why is no real title available?)
• Bootstrap confidence levels for phylogenetic trees
• Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experi\-ments.
• Cluster analysis.
• Estimating the number of clusters in a data set via the gap statistic
• Finding Groups in Data
• Gene expression analysis with the parametric bootstrap
• Statistical inference for simultaneous clustering of gene expression data
• The analysis of gene expression data. Methods and software
• The elements of statistical learning. Data mining, inference, and prediction
• The problem of regions

Cited in

(18)

• Cross-study replicability in cluster analysis
• Quest for a sensible null distribution in longitudinal microarray experiments
• Cluster-wise assessment of cluster stability
• Cluster analysis of gene expression data
• Assessing agreement of clustering methods with gene expression microarray data
• Clustering gene expression profile data by selective shrinkage
• Statistical inference for simultaneous clustering of gene expression data
• Clustering microarray data: theoretical and practical issues
• scientific article; zbMATH DE number 1750189 (Why is no real title available?)
• A New Approach to the Estimation of Inter-Variable Correlation
• A Generalized Clustering Problem, with Application to DNA Microarrays
• scientific article; zbMATH DE number 1750183 (Why is no real title available?)
• Identification of target clusters by using the restricted normal mixture model
• Some statistical properties of gene expression clustering for array data
• Wilks' \(\Lambda \) dissimilarity measures for gene clustering: an approach based on the identification of transcription modules
• Big data naturally rescaled
• Clustering of gene locations
• Clustering Objects on Subsets of Attributes (with Discussion)

Describes a project that uses

Uses Software

• R
• vsn
• affy
• clusfind

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