Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experi\-ments.

DOI10.1073/PNAS.161273698MaRDI QIDQ2733923zbMATH OpenOpenAlexWikidataFDO

Authors M. Kathleen Kerr, Gary A. Churchill

Publication date 13 August 2001

Published in Proceedings of the National Academy of Sciences of the United States of America (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.161273698

zbMATH Keywords

sporulation

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Analysis of variance and covariance (ANOVA) (62J10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

• Cluster structure inference based on clustering stability with applications to microarray data analysis
• Assessing agreement of clustering methods with gene expression microarray data
• Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
• Clustering microarray data: theoretical and practical issues
• Analysing microarray expression data through effective clustering

Cites work

• Bootstrap confidence levels for phylogenetic trees
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Special issue: Biostatistics

Cited in

(26)

• Assessing agreement of clustering methods with gene expression microarray data
• Statistical challenges in functional genomics. (With comments and a rejoinder).
• Statistical inference for simultaneous clustering of gene expression data
• Bootstrapping estimates of stability for clusters, observations and model selection
• Clustering of unevenly sampled gene expression time-series data
• Problems in gene clustering based on gene expression data
• A probabilistic theory of clustering
• Initializing \(k\)-means clustering by bootstrap and data depth
• Gene discovery using Pareto depth sampling distributions
• A sequential clustering algorithm with applications to gene expression data
• Multi-objective selection for collecting cluster alternatives
• On the added value of bootstrap analysis for K-means clustering
• A graph theoretical approach to data fusion
• Selecting Differentially Expressed Genes from Microarray Experiments
• Characterization of lung tumor subtypes through gene expression cluster validity assessment
• Modeling Microarray Data Using a Threshold Mixture Model
• Some statistical properties of gene expression clustering for array data
• Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
• Statistical Techniques for Microarray Data: A Partial Overview
• Bootstrapping for Significance of Compact Clusters in Multidimensional Datasets
• COMPARISON OF DIFFERENT METHODOLOGIES TO IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN TWO-SAMPLE cDNA MICROARRAYS
• Gene expression analysis with the parametric bootstrap
• Stability estimation for unsupervised clustering: a review
• A novel clustering method with maximum number of ordered centroids and stable clusters for optimal ranking in a univariate setting
• A framework for stability-based module detection in correlation graphs
• A permutation test for determining significance of clusters with applications to spatial and gene expression data

This page was built for publication: Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experi\-ments.

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2733923)