Cluster structure inference based on clustering stability with applications to microarray data analysis
Summary: This paper focuses on the stability-based approach for estimating the number of clusters \(K\) in microarray data. The cluster stability approach amounts to performing clustering successively over random subsets of the available data and evaluating an index which expresses the similarity of the successive partitions obtained. We present a method for automatically estimating \(K\) by starting from the distribution of the similarity index. We investigate how the selection of the hierarchical clustering (HC) method, respectively the similarity index, influences the estimation accuracy. The paper introduces a new similarity index based on a partition distance. The performance of the new index and that of other well-known indices are experimentally evaluated by comparing the `true' data partition with the partition obtained at each level of an HC tree. A case study is conducted with a publicly available Leukemia dataset.
- Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
- Clustering microarray data: theoretical and practical issues
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- A spectral clustering method for microarray data
- Clustering of microarray data via clique partitioning
- Hybrid hierarchical clustering with applications to microarray data
- scientific article; zbMATH DE number 1928681
- Determination of cluster number in clustering microarray data
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- Estimating number of clusters based on a general similarity matrix with application to microarray data
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- Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
- scientific article; zbMATH DE number 1750190 (Why is no real title available?)
- Simultaneous estimation of cluster number and feature sparsity in high‐dimensional cluster analysis
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