MAST
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(40)- Graphical models for zero-inflated single cell gene expression
- Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
- A unified statistical framework for single cell and bulk RNA sequencing data
- Network modeling in biology: statistical methods for gene and brain networks
- DEseq
- svaseq
- UpSetR
- SC3
- Sincera
- DNA
- SCODE
- GenClust
- ToppGene Suite
- CIDR
- scRNAseq
- ZIFA
- CytoCtrlAnalyser
- powsimR
- MrTADFinder
- SNN-Cliq
- splatter
- zinbwave
- GlobalMIT
- BPSC
- DESeq2
- A compositional model to assess expression changes from single-cell RNA-seq data
- Statistical analysis of zero-inflated nonnegative continuous data: a review
- A hierarchical Bayesian model for single-cell clustering using RNA-sequencing data
- Contrastive latent variable modeling with application to case-control sequencing experiments
- distinct
- muscData
- HDCytoData
- diffcyt
- Linnorm
- CellMixS
- EMDomics
- BLGGM
- glmGamPoi
- BASiCS
- Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis
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