Graphical models for zero-inflated single cell gene expression
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Publication:2318662
DOI10.1214/18-AOAS1213zbMath1423.62148arXiv1610.05857OpenAlexW3106175892WikidataQ92462615 ScholiaQ92462615MaRDI QIDQ2318662
Andrew McDavid, Mathias Drton, Raphael Gottardo, Noah Robin Simon
Publication date: 15 August 2019
Published in: The Annals of Applied Statistics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1610.05857
Ridge regression; shrinkage estimators (Lasso) (62J07) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
Related Items (7)
Prioritizing Autism Risk Genes Using Personalized Graphical Models Estimated From Single-Cell RNA-seq Data ⋮ Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data ⋮ An R package AZIAD for analysing zero-inflated and zero-altered data ⋮ HurdleNormal ⋮ Graphical models for zero-inflated single cell gene expression ⋮ Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data ⋮ Phylogenetically informed Bayesian truncated copula graphical models for microbial association networks
Uses Software
Cites Work
- Lectures on algebraic statistics
- High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
- Sparse graphical models for exploring gene expression data
- Graphical models for zero-inflated single cell gene expression
- High-dimensional graphs and variable selection with the Lasso
- Standardization and the Group Lasso Penalty
- Variable Selection with Error Control: Another Look at Stability Selection
- Selection and estimation for mixed graphical models
- Strong Rules for Discarding Predictors in Lasso-Type Problems
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