TCGAbiolinks
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(20)- Variational nonparametric discriminant analysis
- MSVMpack
- GenSVM
- sommer
- TANDEM
- brunnermunzel
- TCGA-assembler
- proxdist
- ClassifyR
- CorShrink
- palasso
- iClusterPlus
- FSCseq
- NB.MClust
- DESeq2
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- Sparse classification with paired covariates
- Modeling tumour heterogeneity of PD-L1 expression in tumour progression and adaptive therapy
- Identification of supervised and sparse functional genomic pathways
- ConsensusClusterPlus
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