Identification of supervised and sparse functional genomic pathways

DOI10.1515/SAGMB-2018-0026MaRDI QIDQ2195286zbMATH OpenOpenAlexWikidataFDO

Authors Fan Zhang, Jeffrey C. Miecznikowski, David L. Tritchler

Publication date 8 September 2020

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2018-0026

zbMATH Keywords

instabilitysparsepathway analysissupervised network

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Systems biology, networks (92C42)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 224037 (Why is no real title available?)
• A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
• A sparse PLS for variable selection when integrating omics data
• Extensions of sparse canonical correlation analysis with applications to genomic data
• Identification of consistent functional genetic modules
• Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis
• Sparse canonical correlation analysis with application to genomic data integration
• Stability Selection
• Subsampling

Cited in

(3)

• Potential genes and pathways of neonatal sepsis based on functional gene set enrichment analyses
• Identification of consistent functional genetic modules
• On the sample complexity of cancer pathways identification

Describes a project that uses

Uses Software

• SummarizedExperiment
• TCGAbiolinks
• PMA
• mixOmics

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