Sparse canonical correlation analysis with application to genomic data integration

DOI10.2202/1544-6115.1406zbMATH Open1276.92071OpenAlexW1967827763WikidataQ33409957 ScholiaQ33409957MaRDI QIDQ2864031FDOQ2864031

Authors: Elena Parkhomenko, David L. Tritchler, Joseph Beyene 

Publication date: 5 December 2013

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.2202/1544-6115.1406

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zbMATH Keywords

data integrationcanonical correlationsparseness

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Cited In (47)

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• On the rank-deficient canonical correlation technique solved by analytic spectral decomposition
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• Ensemble sparse estimation of covariance structure for exploring genetic disease data
• Highlighting relationships between heterogeneous biological data through graphical displays based on regularized canonical correlation analysis
• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
• Eigenvector-based sparse canonical correlation analysis: fast computation for estimation of multiple canonical vectors
• Large correlation analysis
• Connecting the multivariate partial least squares with canonical analysis: a path-following approach
• An iterative penalized least squares approach to sparse canonical correlation analysis
• Using elastic net restricted kernel canonical correlation analysis for cross-language information retrieval
• PCAN: probabilistic correlation analysis of two non-normal data sets
• Development of a canonical correlation model involving non linearity and asymmetric variables
• Trace Lasso regularization for adaptive sparse canonical correlation analysis via manifold optimization approach
• Integrative sparse \(K\)-means with overlapping group Lasso in genomic applications for disease subtype discovery
• Random matrix theory in statistics: a review
• Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis
• Single-index modulated multiple testing
• Wilks' \(\Lambda \) dissimilarity measures for gene clustering: an approach based on the identification of transcription modules
• Minimax estimation in sparse canonical correlation analysis
• Sparse multiway canonical correlation analysis for multimodal stroke recovery data
• Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
• Integrative analysis of transcriptomic and metabolomic data via sparse canonical correlation analysis with incorporation of biological information
• Angle-based joint and individual variation explained
• A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
• Extensions of sparse canonical correlation analysis with applications to genomic data
• Resistant multiple sparse canonical correlation
• Dimension-wise sparse low-rank approximation of a matrix with application to variable selection in high-dimensional integrative analyzes of association
• Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis
• Sparse canonical correlation analysis from a predictive point of view
• Maximization of Matrix Trace Function of Product Stiefel Manifolds
• Minimax Quasi-Bayesian Estimation in Sparse Canonical Correlation Analysis via a Rayleigh Quotient Function
• Genome-wide association studies with high-dimensional phenotypes
• Sparse canonical covariance analysis for high-throughput data
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• Sparse integrative clustering of multiple omics data sets
• Identifying outliers using multiple kernel canonical correlation analysis with application to imaging genetics
• Surrogate modeling of high-dimensional problems via data-driven polynomial chaos expansions and sparse partial least square
• Canonical correlation analysis in high dimensions with structured regularization
• Inferring gene-gene interactions and functional modules using sparse canonical correlation analysis
• Identification of supervised and sparse functional genomic pathways
• Sparse CCA using a lasso with positivity constraints
• Missing value imputation for gene expression data by tailored nearest neighbors
• Multimodal correlations-based data clustering
• A method for generating realistic correlation matrices

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