PMA
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Description
Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in Witten, Tibshirani and Hastie (2009) <doi:10.1093/biostatistics/kxp008> and Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data <doi:10.2202/1544-6115.1470>.
Cited in
(only showing first 100 items - show all)- A feasible method for optimization with orthogonality constraints
- EESPCA
- Integrative sparse principal component analysis
- Angle-based joint and individual variation explained
- Latent variable graphical model selection via convex optimization
- LPGraph
- netReg
- cpi
- A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
- Extensions of sparse canonical correlation analysis with applications to genomic data
- Sparse principal component analysis via variable projection
- DCA
- CVR
- A general framework for association analysis of heterogeneous data
- The cluster graphical Lasso for improved estimation of Gaussian graphical models
- Robust groupwise least angle regression
- Sparse principal component regression for generalized linear models
- Continuum directions for supervised dimension reduction
- Covariance matrix estimation for left-censored data
- Kernel generalized canonical correlation analysis
- A plug-in approach to sparse and robust principal component analysis
- Advances in principal balances for compositional data
- Variational inference for probabilistic Poisson PCA
- The spectral norm of random inner-product kernel matrices
- Rate-optimal perturbation bounds for singular subspaces with applications to high-dimensional statistics
- Parameter selection for nonnegative $l_1$ matrix/tensor sparse decomposition
- \(M\)-type smoothing spline estimators for principal functions
- WGCNA
- Discussion: Latent variable graphical model selection via convex optimization
- Rejoinder: Latent variable graphical model selection via convex optimization
- nlmeU
- glasso
- Sparse integrative clustering of multiple omics data sets
- Bootstrap inference for network construction with an application to a breast cancer microarray study
- Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
- SQOPT
- Sparse principal component based high-dimensional mediation analysis
- ordPens
- Canonical correlation analysis for elliptical copulas
- Projections onto the intersection of a one-norm ball or sphere and a two-norm ball or sphere
- Eigenvector-based sparse canonical correlation analysis: fast computation for estimation of multiple canonical vectors
- GPLP
- Sparse principal component regression via singular value decomposition approach
- AgFlow: fast model selection of penalized PCA via implicit regularization effects of gradient flow
- gNCA
- Testing independence between two spatial random fields
- Multimodal correlations-based data clustering
- PTA
- Alternating maximization: unifying framework for 8 sparse PCA formulations and efficient parallel codes
- Biclustering via structured regularized matrix decomposition
- CCA
- spls
- mixOmics
- JIVE
- Best sparse rank-1 approximation to higher-order tensors via a truncated exponential induced regularizer
- Several approximation algorithms for sparse best rank-1 approximation to higher-order tensors
- Grouped feature importance and combined features effect plot
- A new randomized Kaczmarz based kernel canonical correlation analysis algorithm with applications to information retrieval
- Surrogate modeling of high-dimensional problems via data-driven polynomial chaos expansions and sparse partial least square
- A sparse rank-1 approximation algorithm for high-order tensors
- tSSNALM: a fast two-stage semi-smooth Newton augmented Lagrangian method for sparse CCA
- Sparse generalized canonical correlation analysis via linearized Bregman method
- Identification of supervised and sparse functional genomic pathways
- A multiscale virtual element method for elliptic problems in heterogeneous porous media
- Connecting the multivariate partial least squares with canonical analysis: a path-following approach
- Reduced rank regression with matrix projections for high-dimensional multivariate linear regression model
- Generalized canonical correlation analysis for classification
- Discriminative variable selection for clustering with the sparse Fisher-EM algorithm
- Data science, big data and statistics
- Factor analysis via components analysis
- Subspace perspective on canonical correlation analysis: dimension reduction and minimax rates
- ESSC
- Efficient computation for differential network analysis with applications to quadratic discriminant analysis
- Lasso meets horseshoe: a survey
- Certifiably optimal sparse principal component analysis
- Compressed covariance estimation with automated dimension learning
- cmprskQR
- hglasso
- Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data
- Approximated penalized maximum likelihood for exploratory factor analysis: an orthogonal case
- A note on rank reduction in sparse multivariate regression
- PLS for Big Data: a unified parallel algorithm for regularised group PLS
- siggenes
- penalizedLDA
- Sparsistency and agnostic inference in sparse PCA
- Genome-wide association studies with high-dimensional phenotypes
- Inferring gene-gene interactions and functional modules using sparse canonical correlation analysis
- Robust computation of linear models by convex relaxation
- Do semidefinite relaxations solve sparse PCA up to the information limit?
- ROBPCA
- SoNIA
- Colibri
- Nonconvex and nonsmooth optimization with generalized orthogonality constraints: an approximate augmented Lagrangian method
- scout
- IPF-LASSO: integrative \(L_1\)-penalized regression with penalty factors for prediction based on multi-omics data
- plsdof
- spcov
- Asymptotic equivalence of quantum state tomography and noisy matrix completion
- Principal trend analysis for time-course data with applications in genomic medicine
- Minimax sparse principal subspace estimation in high dimensions
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