Penalized differential pathway analysis of integrative oncogenomics studies

DOI10.1515/sagmb-2013-0020zbMath1296.92194OpenAlexW2313792483WikidataQ47797568 ScholiaQ47797568MaRDI QIDQ743607

D. Kharzeev

Publication date: 25 September 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2013-0020

zbMATH Keywords

data integrationcancerpenalized estimationsimultaneous-equations model (SEM)

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10)

Related Items (2)

Transcriptomic heterogeneity in cancer as a consequence of dysregulation of the gene-gene interaction network ⋮ A test for detecting differential indirect trans effects between two groups of samples

Uses Software

• KEGG
• ARACNE

Cites Work

• The solution path of the generalized lasso
• Properties and refinements of the fused Lasso
• Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer
• A random coefficients model for regional co-expression associated with DNA copy number
• L₁Penalized Estimation in the Cox Proportional Hazards Model
• Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
• Stability Selection

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