Integrative sparse K-means with overlapping group Lasso in genomic applications for disease subtype discovery

DOI10.1214/17-AOAS1033zbMATH Open1416.62605OpenAlexW2739448560WikidataQ41687889 ScholiaQ41687889MaRDI QIDQ2404456FDOQ2404456

Zhiguang Huo, George C. Tseng

Publication date: 18 September 2017

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://projecteuclid.org/euclid.aoas/1500537733

zbMATH Keywords

ADMMoverlapping group Lassocancer subtypeclustering accuracyomics integrative analysis

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Ridge regression; shrinkage estimators (Lasso) (62J07)

Cited In (4)

• RSC-based differential model with correlation removal for improving multi-omics clustering
• Bidimensional linked matrix factorization for pan-omics pan-cancer analysis
• Integrative clustering methods for multi-omics data
• Covariate‐driven factorization by thresholding for multiblock data

   Recommendations

• Modeling gene-covariate interactions in sparse regression with group structure for genome-wide association studies 👍 👎
• Sparse integrative clustering of multiple omics data sets 👍 👎
• Fast identification of biological pathways associated with a quantitative trait using group lasso with overlaps 👍 👎
• Variable selection for high-dimensional genomic data with censored outcomes using group Lasso prior 👍 👎
• Overlapping group lasso for high-dimensional generalized linear models 👍 👎
• Ensemble sparse estimation of covariance structure for exploring genetic disease data 👍 👎
• A sparse PLS for variable selection when integrating omics data 👍 👎
• The sparse group lasso for high-dimensional integrative linear discriminant analysis with application to alzheimer's disease prediction 👍 👎
• Sparse canonical correlation analysis with application to genomic data integration 👍 👎
• Bayesian group Lasso for nonparametric varying-coefficient models with application to functional genome-wide association studies 👍 👎

This page was built for publication: Integrative sparse \(K\)-means with overlapping group Lasso in genomic applications for disease subtype discovery

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2404456)