ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification

DOI10.1007/S11634-020-00401-YMaRDI QIDQ2201329zbMATH OpenOpenAlexFDO

Authors Nathan Cunningham, J. E. Griffin, David L. Wild

Publication date 29 September 2020

Published in Advances in Data Analysis and Classification. ADAC (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/s11634-020-00401-y

zbMATH Keywords

Bayesian inferencecluster analysismixture modelsparticle Monte Carlo

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05)

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Cites work

• scientific article; zbMATH DE number 5919872 (Why is no real title available?)
• A sequential particle filter method for static models
• Asymptotic behaviour of the posterior distribution in overfitted mixture models
• Blind Deconvolution via Sequential Imputations
• Clustering South African households based on their asset status using latent variable models
• Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
• Exact and approximate sum representations for the Dirichlet process
• Improved criteria for clustering based on the posterior similarity matrix
• Modelling heterogeneity with and without the Dirichlet process
• On distribution-free tests for equality of survival distributions
• On particle Gibbs sampling
• Particle Gibbs split-merge sampling for Bayesian inference in mixture models
• Particle Markov Chain Monte Carlo Methods
• Selection of variables in cluster analysis: An empirical comparison of eight procedures
• Sequential Monte Carlo methods for mixtures with normalized random measures with independent increments priors

Cited in

(4)

• MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing
• ParticleMDI
• Bayesian unsupervised learning with multiple data types
• A Common Atoms Model for the Bayesian Nonparametric Analysis of Nested Data

Describes a project that uses

Uses Software

• clusternomics
• multiClust
• survminer
• ggplot2

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