Modeling gene-covariate interactions in sparse regression with group structure for genome-wide association studies

DOI10.1515/SAGMB-2014-0073MaRDI QIDQ3465248zbMATH OpenOpenAlexWikidataFDO

Authors Yun Li, George T. O'Connor, Josée Dupuis, Eric D. Kolaczyk

Publication date 21 January 2016

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc4510949

zbMATH Keywords

genome-wide association studiessparse regressiongene-environment/covariate interaction

Mathematics Subject Classification ID

General biostatistics (92B15) Genetics and epigenetics (92D10)

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Cites work

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• Relaxed Lasso
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• The Adaptive Lasso and Its Oracle Properties
• The Dantzig selector: statistical estimation when \(p\) is much larger than \(n\). (With discussions and rejoinder).
• The composite absolute penalties family for grouped and hierarchical variable selection
• Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
• Variable selection using adaptive nonlinear interaction structures in high dimensions
• Variable selection with the strong heredity constraint and its oracle property

Cited in

(5)

• Ensemble sparse estimation of covariance structure for exploring genetic disease data
• Integrative sparse \(K\)-means with overlapping group Lasso in genomic applications for disease subtype discovery
• Group additive regression models for genomic data analysis
• Incorporating genetic heterogeneity in whole-genome regressions using interactions
• Of mice and men: sparse statistical modeling in cardiovascular genomics

Describes a project that uses

Uses Software

• glmnet

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