PUseqClust: a clustering analysis method for RNA-seq data

DOI10.13328/J.CNKI.JOS.005512MaRDI QIDQ5209984zbMATH OpenOpenAlexFDO

Authors Xianfeng Shi, Xuejun Liu, Li Zhang

Publication date 22 January 2020

Full work available at URL http://www.jos.org.cn/html/2019/9/5512.htm

zbMATH Keywords

clustering analysisLaplace methodmixture student's \(t\) distributionnegative binomial distributionRNA-seq

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Pattern recognition, speech recognition (68T10) Protein sequences, DNA sequences (92D20)

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Cited in

(6)

• A Poisson-based adaptive affinity propagation clustering for SAGE data
• Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
• \textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm
• PUseqClust
• Clustering of single-cell transcriptome data based on evolutionary algorithm in assimilation with fuzzy C-means
• Classification and clustering of sequencing data using a Poisson model

Describes a project that uses

Uses Software

• mclust

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