Mfold
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Cited in
(only showing first 100 items - show all)- In silico analysis of EST and genomic sequences allowed the prediction of cis-regulatory elements for Entamoeba histolytica mRNA polyadenylation
- Detecting conserved secondary structures in RNA molecules using constrained structural alignment
- Computational identification of novel microRNA homologs in the chimpanzee genome
- Computational identification of 48 potato microRNAs and their targets
- A grammatical approach to RNA-RNA interaction prediction
- Glasgow subgraph solver
- vf3lib
- Dynamic extended folding: modeling the RNA secondary structures during co-transcriptional folding
- Rfam
- Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA
- The end-to-end distance of RNA as a randomly self-paired polymer
- Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'
- RNAshapes
- onechannelgui
- tRNAscan-SE
- On conflict free DNA codes
- GenRGenS
- RNAsoft
- Systematic discovery of the grammar of translational inhibition by RNA hairpins
- Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences
- ViennaRNA
- RNAfold
- RNAsubopt
- RNA bioinformatics
- On topological indices for small RNA graphs
- The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability
- HBV-encoded microRNA candidate and its target
- Symmetric time warping, Boltzmann pair probabilities and functional genomics
- Combinatorics of locally optimal RNA secondary structures
- Asymptotic number of hairpins of saturated RNA secondary structures
- UNAFold
- Cofolga
- A fuzzy model of predicting RNA secondary structure
- Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks
- Cofolga: a genetic algorithm for finding the common folding of two RNAs
- ARTS
- miRBase
- RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
- RNA secondary structures with given motif specification: combinatorics and algorithms
- snoSeeker
- VARNA
- CompaRNA
- Nondeterministic seedless oritatami systems and hardness of testing their equivalence
- Oases
- RNAmute
- RNAexinv
- RNAfbinv
- RNAalifold
- CONTRAfold
- CentroidAlign
- RactIP
- COFOLD
- PicXAA-R
- CENTROIDFOLD
- IPknot
- DAFS
- PETfold
- PETcofold
- PPfold
- RNAG
- R-Coffee
- RNAspa
- RNASTAR
- jViz.Rna
- Assemble
- R4RNA
- RILogo
- R2R
- RNA2D3D
- ModeRNA
- RNAplex
- RSeQC
- SeqMap
- ASPIC
- PIntron
- Exogean
- REDItools
- NGS-Trex
- SortMeRNA
- ARB
- TagCleaner
- EMIRGE
- Minimus
- RIPSeeker
- PARalyzer
- DARNED
- ExpEdit
- PatSearch
- WAR
- SCOOP
- AstexViewer
- ASPicDB
- PolyA_DB
- SPEPlip
- ASTALAVISTA
- OptiRNAi
- OligoWalk
- ProbKnot
- CONCORD
- NNDB
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