Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'

DOI10.1016/j.jtbi.2012.08.044zbMath1397.92233OpenAlexW2022027547WikidataQ31096994 ScholiaQ31096994MaRDI QIDQ1790867

Hervé Seligmann

Publication date: 4 October 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2012.08.044

zbMATH Keywords

RNA polymeraseparallel genetic codetetracodontranscriptional mutation gradienttriplex

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10)

Related Items

Putative anticodons in mitochondrial trna sidearm loops: pocketknife tRNAs?, RNA editing and modifications of RNAs might have favoured the evolution of the triplet genetic code from an ennuplet code

Uses Software

• Mfold
• PSI-BLAST
• BLAST
• CONCORD

Cites Work

• Unnamed Item
• RNA secondary structures and their prediction
• A 2006 review of circular codes in genes
• Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
• Essential molecular functions associated with the circular code evolution
• Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences
• Overlapping genetic codes for overlapping frameshifted genes in Testudines, and \textit{Lepidochelys olivacea} as special case
• The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability
• Circular codes revisited: a statistical approach
• CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization