Overlapping genetic codes for overlapping frameshifted genes in Testudines, and \textit{Lepidochelys olivacea} as special case

DOI10.1016/J.COMPBIOLCHEM.2012.08.002MaRDI QIDQ2359346zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Hervé Seligmann

Publication date 28 June 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2012.08.002

zbMATH Keywords

codon reassignmentcodon usagehomologyribosomal frameshiftsynonymous codon optimizationtermination codontRNA synthetase

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• A 2006 review of circular codes in genes
• Circular codes revisited: a statistical approach
• Cost minimization of ribosomal frameshifts
• Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
• Essential molecular functions associated with the circular code evolution
• Positive correlations between molecular and morphological rates of evolution
• Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences
• The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability
• The evolution of the genetic code took place in an anaerobic environment

Cited in

(5)

• Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'
• The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability
• The ribosome as a missing link in the evolution of life
• Putative anticodons in mitochondrial trna sidearm loops: pocketknife tRNAs?
• The maximal \(C^3\) self-complementary trinucleotide circular code \(X\) in genes of bacteria, eukaryotes, plasmids and viruses

Describes a project that uses

Uses Software

• tRNAscan-SE
• PSI-BLAST
• BLAST

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