ViennaRNA
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Cited in
(65)- Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
- Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic Earth
- On the problem of reconstructing a mixture of \textsc{rna} structures
- An RNA-based theory of natural universal computation
- Euro-Par 2004 Parallel Processing
- Strand design for biomolecular computation.
- In vitro implementation of a stack data structure based on DNA strand displacement
- RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
- Algebraic dynamic programming for multiple context-free grammars
- RNA bioinformatics
- PUNCH
- DAMIEN
- Rfam
- Biopython
- RNAshapes
- RNAfold
- RNAsubopt
- EMBOSS
- FFTbor2D
- Mfold
- UNAFold
- FR3D
- RNAforester
- VARNA
- Infernal
- CONTRAfold
- ModeRNA
- PseudoViewer3
- Rnaz
- RNAstructure
- SeqMap
- PubChem
- ERD
- FFTbor
- KFOLD
- MODENA
- MSMBuilder
- NNDB
- RNAexpNumNbors
- MutationOrder
- PyCogent
- Circos
- IntaRNA
- KineFold
- MS2distance
- patteRNA
- reactIDR
- rna-state-inf
- TED
- scientific article; zbMATH DE number 2009842 (Why is no real title available?)
- scientific article; zbMATH DE number 2087015 (Why is no real title available?)
- The rainbow spectrum of RNA secondary structures
- IPMiner
- Efficient Algorithm for Testing Structure Freeness of Finite Set of Biomolecular Sequences
- Bioinformatics. Volume II: structure, function, and applications
- Algorithms in computational molecular biology. Techniques approaches and applications.
- Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3D module identification
- ExpertRNA: A New Framework for RNA Secondary Structure Prediction
- Are RNA networks scale-free?
- RLF-LPI: an ensemble learning framework using sequence information for predicting lncRNA-protein interaction based on AE-ResLSTM and fuzzy decision
- RNA folding kinetics using Monte Carlo and Gillespie algorithms
- Temporal ordering of substitutions in RNA evolution: uncovering the structural evolution of the Human Accelerated Region 1
- Algebraic dynamic programming on trees
- Rule set design problems for oritatami systems
- An IP algorithm for RNA folding trajectories
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