Unified approach to partition functions of RNA secondary structures

DOI10.1007/S00285-013-0737-8MaRDI QIDQ471074zbMATH OpenOpenAlexWikidataFDO

Authors Ralf Bundschuh

Publication date 13 November 2014

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-013-0737-8

zbMATH Keywords

exact calculation of partition functionsmolten-native transitionRNA denaturationRNA folding

Mathematics Subject Classification ID

Classical equilibrium statistical mechanics (general) (82B05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• scientific article; zbMATH DE number 426426
• Large-N random matrices for RNA folding
• RNA folding and large \(N\) matrix theory
• On finding all suboptimal foldings of an RNA molecule
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Cites work

• scientific article; zbMATH DE number 3675903 (Why is no real title available?)
• scientific article; zbMATH DE number 5042917 (Why is no real title available?)
• Random polymers and delocalization transitions

Cited in

(5)

• Thermodynamic Analysis of Interacting Nucleic Acid Strands
• Theory and simulations for RNA folding in mixtures of monovalent and divalent cations
• Parametric analysis of RNA branching configurations
• RNA folding and large \(N\) matrix theory
• A phase transition for the minimum free energy of secondary structures of a random RNA

Describes a project that uses

Uses Software

• KineFold
• Mfold
• Sfold

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