Sfold
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Cited in
(31)- Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges
- RNAshapes
- GenRGenS
- RNAsoft
- Systematic discovery of the grammar of translational inhibition by RNA hairpins
- Randomized probe selection algorithm for microarray design
- affypdnn
- Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates
- Mfold
- Cofolga
- snoSeeker
- CONTRAfold
- RSEARCH
- RNAKinetics
- iHOP
- PSoL
- KineFold
- Unified approach to partition functions of RNA secondary structures
- MARNA
- EST-PAGE
- ddbRNA
- RandPS
- DINAMelt
- OligoArray
- Regulatory Signals in Genomic Sequences
- Computational identification of microRNAs and their targets
- Computational methods in noncoding RNA research
- Boltzmann ensemble features of RNA secondary structures: a comparative analysis of biological RNA sequences and random shuffles
- Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy
- Variations on RNA folding and alignment: Lessons from Benasque
- Predicting RNA secondary structures with pseudoknots by MCMC sampling
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