Computational identification of microRNAs and their targets

DOI10.1016/J.COMPBIOLCHEM.2006.08.006MaRDI QIDQ884262zbMATH OpenOpenAlexWikidataFDO

Authors Baohong Zhang, Qinglian Wang, George P. Cobb, Todd A. Anderson, Xiao-Ping Pan

Publication date 13 June 2007

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.08.006

zbMATH Keywords

miRNAComputational approachGene regulationMFEIMinimal folding free energy index

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cites work

• Computational detection of microRNAs targeting transcription factor genes in \(Arabidopsis\) \(thaliana\)

Cited in

(17)

• Computational identification of novel microRNA homologs in the chimpanzee genome
• Computational identification of 48 potato microRNAs and their targets
• HBV-encoded microRNA candidate and its target
• Predicting the fate of microRNA target genes based on sequence features
• Ranking of microRNA target prediction scores by Pareto front analysis
• Identification of specific sequence motifs in the upstream region of 242 human miRNA genes
• Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
• New syntax to describe local continuous structure-sequence information for recognizing new pre-miRNAs
• scientific article; zbMATH DE number 6800749 (Why is no real title available?)
• Computational Modeling of miRNA Biogenesis
• Computational detection of microRNAs targeting transcription factor genes in \(Arabidopsis\) \(thaliana\)
• Genome-wide computational analyses of microRNAs and their targets from \textit{Canis familiaris}
• Human microRNA target identification by RRSM
• Research in Computational Molecular Biology
• Activity of microRNAs and transcription factors in gene regulatory networks.
• MicroRNA Regulatory Network: Structure and Function
• MicroRNA protocols

Describes a project that uses

Uses Software

• Mfold
• Sfold
• EST-PAGE

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