Implementation of a Markov model for phylogenetic trees

DOI10.1016/J.JTBI.2005.08.001MaRDI QIDQ2195072zbMATH OpenOpenAlexWikidataFDO

Authors E. Bohl, P. Lancaster

Publication date 7 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.08.001

zbMATH Keywords

Markov processphylogenetic treephylogeny

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Problems related to evolution (92D15)

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Cites work

• Biological Sequence Analysis
• Estimation of evolutionary distances between homologous nucleotide sequences.
• Irreversible Markov processes for phylogenetic models

Cited in

(8)

• Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
• The algebra of the general Markov model on phylogenetic trees and networks
• Irreversible Markov processes for phylogenetic models
• Computational Methods for Hidden Markov Tree Models—An Application to Wavelet Trees
• Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference
• Syntactic structures and the general Markov models
• Markovian log-supermodularity, and its applications in phylogenetics
• Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny

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