Duality between the local score of one sequence and constrained hidden Markov model
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Cites work
- A context dependent pair hidden Markov model for statistical alignment
- An improved approximation for assessing the statistical significance of molecular sequence features
- Approximations for Distributions of Scan Statistics
- Asymptotic behavior of the local score of independent and identically distributed random sequences.
- Biological Sequence Analysis
- Computing posterior probabilities for score-based alignments using ppALIGN
- Detecting Local High-Scoring Segments: a First-Stage Approach for Genome-Wide Association Studies
- Distributions associated with general runs and patterns in hidden Markov models
- DNA, words and models. Statistics of exceptional words. Translated from the 2003 French original
- Elements related to the largest complete excursion of a reflected BM stopped at a fixed time. Application to local score
- Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
- Exact distribution of the local score for Markovian sequences
- Fast estimation of posterior probabilities in change-point analysis through a constrained hidden Markov model
- GENMARK: Parallel gene recognition for both DNA strands
- scientific article; zbMATH DE number 699389 (Why is no real title available?)
- Improvements on the distribution of maximal segmental scores in a Markovian sequence
- Limit distributions of maximal segmental score among Markov-dependent partial sums
- Maximal length of common words among random letter sequences
- Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
- Probabilistic graphical models.
- Probability density function of the local score position
- Probability that the maximum of the reflected Brownian motion over a finite interval \([0,t]\) is achieved by its last zero before \(t\).
- Scan statistics
- Scan statistics for detecting a local change in variance for two-dimensional normal data
- Scan statistics for monitoring data modeled by a negative binomial distribution
- Strong limit theorems of empirical distributions for large segmental exceedances of partial sums of Markov variables
- Strong limit theorems of empirical functionals for large exceedances of partial sums of i.i.d. variables
- The Erdős-Rényi strong law for pattern matching with a given proportion of mismatches
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