Similarity analysis for DNA sequences based on chaos game representation. Case study: the albumin

DOI10.1016/j.jtbi.2010.09.027zbMath1414.92203OpenAlexW2015605305WikidataQ51655585 ScholiaQ51655585MaRDI QIDQ1736265

Constantin P. Cristescu, Cristina Stan, Eugen I. Scarlat

Publication date: 26 March 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2010.09.027

zbMATH Keywords

albuminDNA sequencesimilarity analysischaos game representation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Related Items (5)

Multifractal detrended cross-correlation analysis of coding and non-coding DNA sequences through chaos-game representation ⋮ DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment ⋮ Multifractal detrended cross-correlation analysis of genome sequences using chaos-game representation ⋮ A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding ⋮ Comparative analysis of bacterial essential and nonessential genes with Hurst exponent based on chaos game representation

Cites Work

• Unnamed Item
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Generalized lattice graphs for 2D-visualization of biological information
• Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
• Directed graphs of DNA sequences and their numerical characterization

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