On algorithmic analysis of transcriptional regulation by LTL model checking

DOI10.1016/j.tcs.2009.02.017zbMath1173.68037OpenAlexW2065630126MaRDI QIDQ2271449

Jiří Barnat, David Šafránek, J. Fabriková, S. Dražan, Ivana Černá, Luboš Brim

Publication date: 7 August 2009

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2009.02.017

zbMATH Keywords

model checkinggenetic regulatory networkpiecewise-linear approximation

Mathematics Subject Classification ID

Specification and verification (program logics, model checking, etc.) (68Q60) Cell biology (92C37) General biology and biomathematics (92B05)

Uses Software

• DiVinE
• BIOCHAM
• RoVerGeNe
• GNA

Cites Work

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• Qualitative simulation of the initiation of sporulation in \textit{Bacillus subtilis}
• Qualitative simulation of genetic regulatory networks using piecewise-linear models
• Dynamical behaviour of biological regulatory networks. II: Immunity control in bacteriophage lambda
• Application of formal methods to biological regulatory networks: extending Thomas' asynchronous logical approach with temporal logic
• Parallel Model Checking Large-Scale Genetic Regulatory Networks with DiVinE
• Model Checking Genetic Regulatory Networks with Parameter Uncertainty
• Reachability and Control Synthesis for Piecewise-Affine Hybrid Systems on Simplices
• Controlling a Class of Nonlinear Systems on Rectangles
• Model Checking Liveness Properties of Genetic Regulatory Networks

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