Diffusion on a curved surface coupled to diffusion in the volume: application to cell biology

DOI10.1016/J.JCP.2007.05.025zbMath1121.92026OpenAlexW2055786818WikidataQ36593412 ScholiaQ36593412MaRDI QIDQ2458560

James C. Schaff, Boris M. Slepchenko, Igor L. Novak, Fei Gao, Diana C. Resasco, Yung-Sze Choi

Publication date: 1 November 2007

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc2346449

zbMATH Keywords

Laplace-Beltrami operatorfinite volume discretizationdissociation rate constantVoronoi decompositionfluorescence loss in photobleachingsampling noise

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Cell biology (92C37) Numerical methods for partial differential equations, initial value and time-dependent initial-boundary value problems (65M99) Numerical methods for partial differential equations, boundary value problems (65N99)

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Uses Software

• PPM

Cites Work

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• Convergence of discrete Laplace-Beltrami operators over surfaces
• Transport and diffusion of material quantities on propagating interfaces via level set methods.
• Analysis of nonlinear dynamics on arbitrary geometries with the Virtual Cell
• Voronoi cell finite difference method for the diffusion operator on arbitrary unstructured grids
• Delaunay triangulations and Voronoi diagrams for Riemannian manifolds
• Variational problems and partial differential equations on implicit surfaces

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