Analysis of nonlinear dynamics on arbitrary geometries with the virtual cell

DOI10.1063/1.1350404MaRDI QIDQ2728811zbMATH OpenOpenAlexWikidataFDO

Authors James C. Schaff, Boris M. Slepchenko, John Wagner, Diana Resasco, Leslie M. Loew, Y. S. Choi

Publication date 12 August 2001

Published in Chaos (Search for Journal in Brave)

Full work available at URL https://semanticscholar.org/paper/961d239fdacf8639a191f78bf6fda2e16d1dc211

Mathematics Subject Classification ID

Probabilistic models, generic numerical methods in probability and statistics (65C20) Cell biology (92C37) Graphical methods in numerical analysis (65S05)

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• Mathematical physiology
• Propagation of frontal polymerization—crystallization waves

Cited in

(10)

• GemCell: A generic platform for modeling multi-cellular biological systems
• Incremental virtual work equation for geometric nonlinear analysis
• Diffusion on a curved surface coupled to diffusion in the volume: application to cell biology
• Heineken, Tsuchiya and Aris: ``On the mathematical status of the pseudo-steady state hypothesis. A classic from Volume 1 of \textit{Mathematical Biosciences}
• Protocell self-reproduction in a spatially extended metabolism-vesicle system
• Simulating cellular dynamics through a coupled transcription, translation, metabolic model.
• A simple axisymmetric extension to virtual cell embedding
• A fully adaptive reaction-diffusion integration scheme with applications to systems biology
• Computational Methods in Systems Biology
• A framework for whole-cell mathematical modeling

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